Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03169 ATGGGCAGTAGACGTAGAACTGCTGAGGATTCTAACAAGGTTGTCAACGGGATGCCAAGCTACGCCCCTCCATTACCACCTTCTAATTCCATGGGTATGGAAGGAAATATTCATCCTTCTCGACTTTCTGATTTTGGAGCCATCGAACAATCTCTTGGATTTCGCATTGAGGACGCCATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAATCAAATAACCAAGCTCTGGGTGCTGATATTCAATTTGGTGCTTTAAGCAAGATACAGGCAATTGCAAACTCGGATACAATTGGTGGATCTCAGACATTGCAATTGCAAAAAGAGTCACAGCCAAATTTGGCTTCAACATCTGGCGGCCATCGTGAGAACTGGGGAGAGTCCAACGTGGCTGATGGAAGTGCTGATACTTCAACTGATGACACCGAAGACAAAAATCAAATGCCTGAAAGGGGAGAATCTAGTGAAAGATCGAAAGATAAATCGGATCAAAAGACGTTAAGAAGGTTAGCTCAAAATCGTGAGGCCGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTGGAGCAAGAGCTACAGCGAGCACGCCAGCAGGGAATATTCATTTCAAGCACCGGAGAGCAGACACATTCAATGAGTGGAAATGGCGCAATGGCATTTGATGCTGAGTATGCACGATGGTTAGAAGAGCACAATAGGCAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTCCGTACCATTGTGGACAATTTCATGACTCAATTTGAAGATATTTATAGGCTGAAAGGTGTTGCAGCTAAAGCTGATGTTTTCCACATTCTATCTGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATCGGAGGCTTCCGCTCATCCGAAATTCTTAAGCTTCTAGTAAGTCATTTGGAGCCTTTAACTGAGCAACAATTGATGGGAATCTACAACTTGCAACAGTCATCCCAACAGGCTGAAGATGCTCTCTCTCAAGGAATGGATGCATTGCAGCAATCACTTTCTGAGACATTAGCTAATGGTTCACCCAATCCATCAGGTTCTTCTGGAAATGTGGCAAACTACATGGGCCAAATGGCTATGGCCATGGGAAAACTCGGTACTCTCGAGGGGTTTCTTCGCCAGGCTGATAACCTGCGACAGCAAACATTGCAACAAATGCTTCGGATATTAACAACCAGGCAATCAGCTAGAGCTCTTCTTGCAATAAGCGATTATTTCTCCCGGCTGCGAGCACTGAGTTCTCTATGGCTTGCACGGCCAAGGGAGTGA 1356 0.4484 MGSRRRTAEDSNKVVNGMPSYAPPLPPSNSMGMEGNIHPSRLSDFGAIEQSLGFRIEDAMNLSRNPVFNQMKSNNQALGADIQFGALSKIQAIANSDTIGGSQTLQLQKESQPNLASTSGGHRENWGESNVADGSADTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03169 451 Coils Coil 185 212 - -
Trre13g03169 451 PANTHER TRANSCRIPTION FACTOR TGA9 123 451 - -
Trre13g03169 451 MobiDBLite consensus disorder prediction 105 168 - -
Trre13g03169 451 Gene3D - 165 217 - -
Trre13g03169 451 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 164 208 IPR004827 GO:0003700|GO:0006355
Trre13g03169 451 SMART brlzneu 162 225 IPR004827 GO:0003700|GO:0006355
Trre13g03169 451 MobiDBLite consensus disorder prediction 139 168 - -
Trre13g03169 451 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 169 184 IPR004827 GO:0003700|GO:0006355
Trre13g03169 451 CDD bZIP_HBP1b-like 166 218 - -
Trre13g03169 451 ProSiteProfiles DOG1 domain profile. 231 448 IPR025422 GO:0006351|GO:0043565
Trre13g03169 451 MobiDBLite consensus disorder prediction 105 137 - -
Trre13g03169 451 MobiDBLite consensus disorder prediction 1 38 - -
Trre13g03169 451 SUPERFAMILY Leucine zipper domain 166 209 IPR046347 GO:0003700|GO:0006355
Trre13g03169 451 Pfam Seed dormancy control 249 324 IPR025422 GO:0006351|GO:0043565
Trre13g03169 451 Pfam Basic region leucine zipper 162 208 IPR004827 GO:0003700|GO:0006355
Trre13g03169 451 FunFam BZIP family transcription factor 165 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03169 Trre-Chr13 38189112 38192943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03169 131 451 bZIP Transcription Factor Family AT3G12250 73.414 4.17e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g03169 DOG1 3.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03169 K14431 - gmx:778136 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03169 13 38189112 38192943 Trre13g03169 13 38189112 38192943 ECH