Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03168 ATGGGCAGTAGACGTAGAACTGCTGAGGATTCTAACAAGGTTGTCAACGGGATGCCAAGCTACGCCCCTCCATTACCACCTTCTAATTCCATGGGTATGGAAGGAAATATTCATCCTTCTCGACTTTCTGATTTTGGAGCCATCGAACAATCTCTTGGATTTCGCATTGAGGACGCCATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAATCAAATAACCAAGCTCTGGGTGCTGATATTCAATTTGGTGCTTTAAGCAAGGCAATTGCAAACTCGGATACAATTGGTGGATCTCAGACATTGCAATTGCAAAAAGAGTCACAGCCAAATTTGGCTTCAACATCTGGCGGCCATCGTGAGAACTGGGGAGAGTCCAACGTGGCTGATGGAAGTGCTGATACTTCAACTGATGACACCGAAGACAAAAATCAAATGCCTGAAAGGGGAGAATCTAGTGAAAGATCGAAAGATAAATCGGATCAAAAGACGTTAAGAAGGTTAGCTCAAAATCGTGAGGCCGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTGGAGCAAGAGCTACAGCGAGCACGCCAGCAGGGAATATTCATTTCAAGCACCGGAGAGCAGACACATTCAATGAGTGGAAATGGCGCAATGGCATTTGATGCTGAGTATGCACGATGGTTAGAAGAGCACAATAGGCAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTCCGTACCATTGTGGACAATTTCATGACTCAATTTGAAGATATTTATAGGCTGAAAGGTGTTGCAGCTAAAGCTGATGTTTTCCACATTCTATCTGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATCGGAGGCTTCCGCTCATCCGAAATTCTTAAGCTTCTAGTAAGTCATTTGGAGCCTTTAACTGAGCAACAATTGATGGGAATCTACAACTTGCAACAGTCATCCCAACAGGCTGAAGATGCTCTCTCTCAAGGAATGGATGCATTGCAGCAATCACTTTCTGAGACATTAGCTAATGGTTCACCCAATCCATCAGGTTCTTCTGGAAATGTGGCAAACTACATGGGCCAAATGGCTATGGCCATGGGAAAACTCGGTACTCTCGAGGGGTTTCTTCGCCAGGCTGATAACCTGCGACAGCAAACATTGCAACAAATGCTTCGGATATTAACAACCAGGCAATCAGCTAGAGCTCTTCTTGCAATAAGCGATTATTTCTCCCGGCTGCGAGCACTGAGTTCTCTATGGCTTGCACGGCCAAGGGAGTGA 1350 0.4489 MGSRRRTAEDSNKVVNGMPSYAPPLPPSNSMGMEGNIHPSRLSDFGAIEQSLGFRIEDAMNLSRNPVFNQMKSNNQALGADIQFGALSKAIANSDTIGGSQTLQLQKESQPNLASTSGGHRENWGESNVADGSADTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03168 449 MobiDBLite consensus disorder prediction 103 135 - -
Trre13g03168 449 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 167 182 IPR004827 GO:0003700|GO:0006355
Trre13g03168 449 SMART brlzneu 160 223 IPR004827 GO:0003700|GO:0006355
Trre13g03168 449 Gene3D - 163 215 - -
Trre13g03168 449 Coils Coil 183 210 - -
Trre13g03168 449 ProSiteProfiles DOG1 domain profile. 229 446 IPR025422 GO:0006351|GO:0043565
Trre13g03168 449 MobiDBLite consensus disorder prediction 103 166 - -
Trre13g03168 449 FunFam BZIP family transcription factor 163 212 - -
Trre13g03168 449 Pfam Seed dormancy control 247 322 IPR025422 GO:0006351|GO:0043565
Trre13g03168 449 MobiDBLite consensus disorder prediction 1 38 - -
Trre13g03168 449 SUPERFAMILY Leucine zipper domain 164 207 IPR046347 GO:0003700|GO:0006355
Trre13g03168 449 MobiDBLite consensus disorder prediction 137 166 - -
Trre13g03168 449 PANTHER TRANSCRIPTION FACTOR TGA9 121 449 - -
Trre13g03168 449 CDD bZIP_HBP1b-like 164 216 - -
Trre13g03168 449 Pfam Basic region leucine zipper 160 206 IPR004827 GO:0003700|GO:0006355
Trre13g03168 449 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 162 206 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03168 Trre-Chr13 38189112 38192943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03168 129 449 bZIP Transcription Factor Family AT3G12250 73.414 5.87e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g03168 DOG1 3.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03168 K14431 - gmx:778136 719.539