Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03156 ATGCCTTACCAAGTCCGCCAAAATCTCTTCATCAGCAACATCAACCACGCCGCAGAAATTCTCCAAAACGGCACCGTTCCACCTCACAACATCACTCACATCCTCTCCGTTCTCAGTTCCGCTTCCATTTCCTTCTTCACCGAATGGCGTTCCACTCTCTCCATCCCCGTCAACCAGATCTCCAAACTTCATGTCTCCGACCTCCCTACCGCCGCCAAGTCCGCTCTCTCTCCGGACAAACTCCTCTACTCCCTTGAATACGCCGGTAAAGACCTCAAACTCGTCAGGATGGCGGTTCCACTAAAAGATACAGAGAATGAGAATTTGTTGGATTATCTCGAAGTTTGTATCGATTTCATTGATCGTAGTAGAAAAGAAGGTTCTGTTTTGGTTCACTGTTTTGCTGGTGTTTCTAGAAGTGCATCGGTTATTACGGCTTATTTGATGAAAAGTGAAAATTTGTCACAAGAAGATGCCCTTGAATCGTTAAGGCAGAGCTGTGGACTTGTTTGCCCCAATGATGGTTTTCTAGAACAGTTGAAAATGTTTGAGGAGATGGGTTTCAAGGTTGATCATTCTAGCCCTGTGTATAAGCGCTTTCGTCTGAAAATACTAGGTGAGAATCATTTCTCAGGGTCGAGGATAGACAGTTCTAAACTTGGTGAAGATCCTGGCATGCCTGTTGAAACTTCTTCAGAGGTGGAAGGAGCTACTAAAGTAGAAAATAATCGTAGCCCTACCTATCGCTGTAAGAAGTGCCGTCGGATTGTTGCATTGCAAGAGCATGTCGTCGATCATATTCCTGGTGAGGGTGAGACTTCCTTTGGTTGGCACAAGCGGAGAAGCGGCAATCCTTTTAACAAGTCGAATGAATCTGAGTGTTCGTCCATATTTATTGAGCCTCTACGATGGATGAAAGATGTTGAGGAAGGCGCATTGGAGGGAAAGTTGTCCTGTGCTCATTGTGATGCCCGTATGGGATACTTCAACTGGGCAGGCACACAATGCAGCTGTGGAAGCTGGATAACCCCAGCTTTTCAACTCCACAAAAGTCGGGTAGATATAAGTCCTGTGTAA 1077 0.4578 MPYQVRQNLFISNINHAAEILQNGTVPPHNITHILSVLSSASISFFTEWRSTLSIPVNQISKLHVSDLPTAAKSALSPDKLLYSLEYAGKDLKLVRMAVPLKDTENENLLDYLEVCIDFIDRSRKEGSVLVHCFAGVSRSASVITAYLMKSENLSQEDALESLRQSCGLVCPNDGFLEQLKMFEEMGFKVDHSSPVYKRFRLKILGENHFSGSRIDSSKLGEDPGMPVETSSEVEGATKVENNRSPTYRCKKCRRIVALQEHVVDHIPGEGETSFGWHKRRSGNPFNKSNESECSSIFIEPLRWMKDVEEGALEGKLSCAHCDARMGYFNWAGTQCSCGSWITPAFQLHKSRVDISPV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03156 358 Gene3D Protein tyrosine phosphatase superfamily 3 206 IPR029021 -
Trre13g03156 358 PIRSF DUSP12 2 71 IPR016278 GO:0006470|GO:0008138
Trre13g03156 358 PIRSF DUSP12 74 358 IPR016278 GO:0006470|GO:0008138
Trre13g03156 358 CDD DSP_DUSP12 4 191 - -
Trre13g03156 358 ProSitePatterns Tyrosine specific protein phosphatases active site. 131 141 IPR016130 GO:0016311|GO:0016791
Trre13g03156 358 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 189 IPR020422 GO:0006470|GO:0008138
Trre13g03156 358 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 354 - -
Trre13g03156 358 FunFam Dual specificity protein phosphatase 12-like 4 206 - -
Trre13g03156 358 Pfam Dual specificity phosphatase, catalytic domain 93 185 IPR000340 GO:0008138|GO:0016311
Trre13g03156 358 SMART dsp_5 1 186 IPR020422 GO:0006470|GO:0008138
Trre13g03156 358 MobiDBLite consensus disorder prediction 215 236 - -
Trre13g03156 358 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 110 165 IPR000387 GO:0016311|GO:0016791
Trre13g03156 358 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 189 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03156 Trre-Chr13 38041571 38046059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03156 4 185 Protein tyrosine phosphatase (PTP) family AT3G06110 27.322 2.37e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03156 K14819 - gmx:100804683 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03156 13 38041571 38046059 Trre13g03156 13 38041571 38046059 ECH