LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g03155	ATGGGACTCTGTCATGGAAAACCCATTGAAACTTCACAAAAAGAAAGAGAAATTTCATCTTTCCCAAGTGAAGAAATTCTTCAACTTCCACCACCATCAAGCTCTCATAATCATCATCATTCAAAAACTAAATCATCTTCAAAGTTTCCATTTTTCAGTCCAAGTCCATTACCAAGTTTCTTCAAAAACTCACCTGCAAATTCAAATTCTAATAGTGTGAGTTCAACCCCTCTTCGGATCTTTAAACGACCCTTTCCCCCTCCTTCTCCGGCAAAGCACATTCGAGCTCTTCTCGCGAGGCGCCACGGCTCTGTGAAGCCTAATGAGGCCACAATTCCTGAAGGGAGTGAGTGTGAAGTTGGGTTGGATAAAAGTTTTGGTTTTTCTAAGCATTTTGTGACAAATTTTGAGATTGAACAAGAAGTTGGTCGTGGCCATTTTGGTTATACTTGTTCTGCTAAGGGTAAAAAAGGAAGCTTTAAGGGTCATGATGTTGCTGTTAAAGTCATTCCTAAATCTAAGATGACAACGGCAATTGCGATAGAGGATGTAAGAAGAGAAGTGAAGATATTGCGAGCTCTAACCGGTCATAAGAATTTAGTACAATTCTATGAAGCCTATGAAGACGACGAAAATGTTTATGTAGTTATGGAATTGTGCAAAGGAGGTGAATTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACTCGGAAGAGGATGCCAGAGTTGTTTTGATTCAGATATTAAGTGTGGTAGCTTATTGTCATCTACAGGGCGTTGTACACCGTGATCTCAAGCCAGAGAATTTTCTTTTTAGTTCTGAGGATGAAAATTCCACGCTGAAGGCAATTGACTTTGGACTCTCTGATTATGTAAAGCCAGATGAGAGATTGAATGATATTGTTGGAAGTGCATATTATGTCGCCCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTGTTATGTGGAAGCCGGCCTTTTTGGGCAAGGACAGAATCTGGCATATTTCGAGCTGTTCTTAAGGCAGATCCGAGTTTCGATGAAGCTCCTTGGCCTTCTTTATCGGCTGATGCAAAAGATTTTGTGAAGAGGCTGTTGAATAAAGACTATCGTAAAAGACTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTGGTGAACCACTTAGAGGATGTAAAGATACCGTTTGATATGATAATCCACAAGCTCGTCAAAACTTACATATGCTCGTCTTCTTTACGCAAATCAGCATTAGGGGCTCTTGCCAAGACATTGACATTGGTTCAGTTGTCATATCTCAAGGAACAATTTACTCTTTTAGGGCCAAACAAAAGTGGACTAATCTCTATGCAGAACTTCAAGACGGCTGTTTTAAAGAGCGCCACTGATGCCTCAAAGGATTCACGAGTCTTAGATTATGTGAACATGGTTAGCTCAATCCAATATCGAAAATTAGATTTTGAGGAATTTTGTGCTGCAGCTATAAGTGTCCATCAACTGGAGGGAATGGATACGTGGGAGCAACATGCAAGGCGTGCCTACGAGCTGTTTGAAAAGGATGGAAATAGACCAATTATGATCGAAGAGCTTGCCTCGGAACTCGGGCTTAGCCCCTCAGTACCTATCCACGTGGTACTCCAAGATTGGATAAGACACTCGGATGGAAAGCTTAGTTTCTTAGGATTTGTCAGACTCCTGCACGGAGTTTCTTCTCGCACATTTCACAAGGCTTGA	1773	0.414	MGLCHGKPIETSQKEREISSFPSEEILQLPPPSSSHNHHHSKTKSSSKFPFFSPSPLPSFFKNSPANSNSNSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEATIPEGSECEVGLDKSFGFSKHFVTNFEIEQEVGRGHFGYTCSAKGKKGSFKGHDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDENVYVVMELCKGGELLDKILSRGGKYSEEDARVVLIQILSVVAYCHLQGVVHRDLKPENFLFSSEDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHLEDVKIPFDMIIHKLVKTYICSSSLRKSALGALAKTLTLVQLSYLKEQFTLLGPNKSGLISMQNFKTAVLKSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMDTWEQHARRAYELFEKDGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFHKA	590

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g03155	590	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	260	272	IPR008271	GO:0004672\|GO:0006468
	Trre13g03155	590	SMART	serkin_6	136	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g03155	590	FunFam	Calcium-dependent protein kinase SK5	308	402	-	-
	Trre13g03155	590	FunFam	CDPK-related kinase 3	128	300	-	-
	Trre13g03155	590	Gene3D	Phosphorylase Kinase; domain 1	129	225	-	-
	Trre13g03155	590	SUPERFAMILY	EF-hand	428	581	IPR011992	-
	Trre13g03155	590	SUPERFAMILY	Protein kinase-like (PK-like)	125	428	IPR011009	-
	Trre13g03155	590	PANTHER	SERINE/THREONINE-PROTEIN KINASE	123	566	-	-
	Trre13g03155	590	ProSitePatterns	Protein kinases ATP-binding region signature.	142	168	IPR017441	GO:0005524
	Trre13g03155	590	MobiDBLite	consensus disorder prediction	1	49	-	-
	Trre13g03155	590	CDD	STKc_CAMK	135	397	-	-
	Trre13g03155	590	Gene3D	-	418	508	-	-
	Trre13g03155	590	Pfam	Protein kinase domain	136	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g03155	590	FunFam	CDPK-related kinase 1	129	224	-	-
	Trre13g03155	590	FunFam	CDPK-related kinase 1	410	582	-	-
	Trre13g03155	590	Gene3D	Transferase(Phosphotransferase) domain 1	226	417	-	-
	Trre13g03155	590	Gene3D	-	424	578	-	-
	Trre13g03155	590	ProSiteProfiles	Protein kinase domain profile.	136	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g03155	Trre-Chr13	38014033	38019181	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g03155	1	586	EF-hand Containing Proteins	AT3G50530	66.773	0.0	841

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Trre13g03155		Pkinase	7.8e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g03155	-		-	gmx:100803625	987.252