Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre13g03148 | ATGTGGCCTGAAGGCGTTCCTTCAAGTACAGCTACACAGCGGATTCTCTTTTGCCAATTCAAAACAATGCAAATGATGTACAAAACAATTTACAAAGCTTTATTAGAGGCTGAACTTGAAAATGAGTATGAACAACAAGACTACTTGAACTTCTTTTGCCTTGGCAATCGCGAGCTCTCCGATAATGAAAACACTTCAAAAACTGTAAAACTTACAGAACAAAACACTCCTCAGGTACTCACTCAAAAGAACAGAAGATTCATGATTGATGTTCATTCAAAAGGAATGATAGTGGATGATGAATATGTGTTAATGGGATCTGCCAACATAAATCAGAGATCCATGGAAGGCACTAGAGACACTGAGATTGCAATGGGAGCATATCAGCCTAATCATGTGGAGGAGTGA | 408 | 0.3873 | MWPEGVPSSTATQRILFCQFKTMQMMYKTIYKALLEAELENEYEQQDYLNFFCLGNRELSDNENTSKTVKLTEQNTPQVLTQKNRRFMIDVHSKGMIVDDEYVLMGSANINQRSMEGTRDTEIAMGAYQPNHVEE | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre13g03148 | 135 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 92 | 114 | IPR001736 | GO:0003824 | |
| Trre13g03148 | 135 | SMART | pld_4 | 87 | 114 | IPR001736 | GO:0003824 | |
| Trre13g03148 | 135 | SUPERFAMILY | Phospholipase D/nuclease | 69 | 123 | - | - | |
| Trre13g03148 | 135 | Pfam | PLD-like domain | 63 | 123 | IPR025202 | - | |
| Trre13g03148 | 135 | Gene3D | Endonuclease Chain A | 8 | 135 | - | - | |
| Trre13g03148 | 135 | PANTHER | PHOSPHOLIPASE D | 1 | 133 | IPR015679 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre13g03148 | Trre-Chr13 | 37859985 | 37860757 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre13g03148 | 1 | 132 | Phospholipase D Gene Family (Wang group) | AT4G00240 | 73.485 | 3.95e-66 | 211 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre13g03148 | K01115 | - | gmx:100786241 | 225.713 |