Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03139 ATGGTGGAAAGAAGGAGAAAGCCTCTAATTCTGTGTTCAACCAAAAATATTATCAATTCCATATTGAAGAAGTCTTCAACGAATGAATTCCCTAAATTGCATTTACCGGTTGGAATTCTCCGATTTTCCAACAAATTGCCTTCTTTTGATCACTCTGCACTCATTGCTCTCTCCACTTCTCTTCTCAAAAGACTTTCCATCACTTCTGGTTCTCCGGTTATGGTCAAGAATGCTGAAATGAACACTCAGAGAATTGCAGTGGCTATTGCTCTGGACCCTCCTGGCAGTGACACCACTACCCTTGATATAAATCATTCACCATCCTCTTCTTCTAGAATAATGCTTGTTTTTCCTTCCTGTGATTTCCCTCTAAGCGGCCCCTTGTTAAATGGTGAAATTGCTTATTTGTCTCCTCTTTTGGCCTTTAATCTTAACTTGCACATTTCATGTTTGAAATCTATTATTCACAATGGTCAAGATGCTTTGTCGTCTTATTTCAAACCTCAATGTCAAGTGGGTGATGAAGATGCGGCTAAAAGTGTTGAAGATTCTGTCATTAATATAGAGTTGGAGCCTCTCGCTGAACCTCCCAGATTTGCCTCCCTTTTGAGGGTTGCTTTTGTGAAGATACCAGAATGTGGCGTCCTTGATTCCATTAAACCAACTTCAGATGTTGAATCCAAAGAACGTCAAGACATGATTGACTTGGCTTTGCAGAAGTACTTTGAAGTCGATAGATATTTGTCAAGTAGAGATATTTTCGGAATTGACATTAGTTGGAATTGTAATTCTACTATTTGCATTCCTTGTAACCACAAAACACAAAAGAAAAGCGACAACTTTATTTGTTTTAAGGTATGTTTACCTCTTCCCTCTTACATATTTAACTTTGATGAAACTGTGTCAGGTTCTTTGTTAGACAGTAACTTATACCTTCGGGTCATTGCTATGGAACCATCAGATGAACCAGTTCTTCGTGTCAATAAAACCTTAACTGCTTTGGTGTTAGTAGGGAGTTCCCCATCTGCCCTTCCTCCGGATTTGCTAATTGCTGGACCAGAAGGGACTGTGCCTTTGCAAAGGGACACAGTGAAGATCTTGGCTTCAATACTAGCACCAACTTTATGTCCAACTGCACTTTCTTCCAAGTTTAGAGTTTCAGTGTTATTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGACGACTAGACTGCTCAAAGGTTTTCCAAGATTCGCAATCACCTGAGGTTTCACAAAATGATCAAAGAGGCAATACATCCGAAGTTGCATCAGTCATTAGGAAATTCACTGAGCCAGTTGGCGAACATGGTGATAGTAACCCTTTGGTGAAATCAAACGGCGAATTTGTGGAGAAGACTTCTGAAAAGACAAGTGGGCCCCAGGTCCTGTTGATTGCGGCTTCTGACAGTTCAGAGGGTCTACCTTCATCTATCAGACGCTGCTTTAGCCATGAAATAAACATGGGGCCTTTAACAGAAGAGCAAAGGGCTGAAATGCTATTGCATTCACTTCAAAATGTTTATGGACTCCACTCTAATACTGATCTAGAGGGTTTTGTAAAAGAAATAGTTGGACAGACATCTGGTTTGATGCCCAGGGATATGTGTGCTTTAATTGCGGATGCTGGTGCCAGCTTATTTCCCAGGAGCAATGCCGAAGTAGACAAAGATGAACCTGAAGATGCAAATAGTTCTCTTATTTCCAAGGTAACGGAGGACAACAACCAGTCAAAAGTTTCAGCTCTGAAACCTGGGAAAGAAGACTTGGTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCAAATGTAAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTACCTCTCTTACATAAAGATCTATTTGCATCCGGATTACGCAAGCGATCTGGTGTTCTTTTGTATGGCCCCCCTGGAACTGGCAAAACTTTATTAGCAAAAGCTGTTGCTACATAA 2052 0.4079 MVERRRKPLILCSTKNIINSILKKSSTNEFPKLHLPVGILRFSNKLPSFDHSALIALSTSLLKRLSITSGSPVMVKNAEMNTQRIAVAIALDPPGSDTTTLDINHSPSSSSRIMLVFPSCDFPLSGPLLNGEIAYLSPLLAFNLNLHISCLKSIIHNGQDALSSYFKPQCQVGDEDAAKSVEDSVINIELEPLAEPPRFASLLRVAFVKIPECGVLDSIKPTSDVESKERQDMIDLALQKYFEVDRYLSSRDIFGIDISWNCNSTICIPCNHKTQKKSDNFICFKVCLPLPSYIFNFDETVSGSLLDSNLYLRVIAMEPSDEPVLRVNKTLTALVLVGSSPSALPPDLLIAGPEGTVPLQRDTVKILASILAPTLCPTALSSKFRVSVLLYGLAGCGKRTVVRYVARRLDCSKVFQDSQSPEVSQNDQRGNTSEVASVIRKFTEPVGEHGDSNPLVKSNGEFVEKTSEKTSGPQVLLIAASDSSEGLPSSIRRCFSHEINMGPLTEEQRAEMLLHSLQNVYGLHSNTDLEGFVKEIVGQTSGLMPRDMCALIADAGASLFPRSNAEVDKDEPEDANSSLISKVTEDNNQSKVSALKPGKEDLVNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVAT 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03139 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 682 IPR027417 -
Trre13g03139 683 Gene3D - 622 683 IPR027417 -
Trre13g03139 683 Gene3D - 504 576 - -
Trre13g03139 683 PANTHER AAA-FAMILY ATPASE 49 683 - -
Trre13g03139 683 Pfam ATPase family associated with various cellular activities (AAA) 664 682 IPR003959 GO:0005524|GO:0016887
Trre13g03139 683 Gene3D - 369 503 IPR027417 -
Trre13g03139 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 557 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03139 Trre-Chr13 37743260 37748069 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03139 595 683 Calmodulin-binding Proteins AT3G56690 45.055 5.07e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03139 K13339 - gmx:100820183 937.176