Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03135 ATGGTGGAGAGAAGGAGAAAGCCTCTAATTCTGTGTTCAACCAAACATATCATCAATTCCGTATTGAAGAAGTCTTCAACGAATGAATTCCCTAAATTGCATTTACCGGTTGGAATTCTCCGATTCTCGAACAAACTGCCTTCTTTTGATCACTCTGCACTCATTGCTCTCTCCACTTCTCTTCTCAAAAGACTTTCCATCACTTCTGGTTCTCCGGTTATGGTCAAGAATGCTGAAATGAACACTCAGAGAATTGCAGTGGCTATTGCTCTGGACCCTCCTGGCAGTGACACCACTACCCTTGATATAGATCACTCACCATCCTCTTCTTCTAGAATAATGCTTGTTTTTCCTTCCTGTGATTTCCCTCTAAGCGACCCCTTGTTAAATGGTGAAATTGCTTATTTGTCTCCTTTTTTGGCCTTCAATCTTAACTTGCACATTTCATGTTTGAAATCTATTATTCACAATGGTCAAGATGCTTTGTCGTCTTATTTCAAACGTCAATGCCAAGTGGGTGATGAAGATGCAGCTAAAAGCATTGAAGATTTTGTAATTAATATAGAGTTGGAGCCTCTCGCTGAACCTCCCAGATTTGCCTCCCTTCTGAGGGTTGCTTTTGTGAAGATACCAGAATGTGGCGTCCTTGATTCCATTAAACCAACTTCAGATGTTGAATCCAAAGAACGTCAAGACATGATTGACTTGGCTTTGCAGAAGTACTTCGAAGTCGATAGATATTTGTCAAGTAAAGATATTTTCGGAATTGACATTAGTTGGAATTGTAATTCCACTATTTGCATTCCTTGTAACCACAAAACACAAAAGAAAAGTGACAACTTTATCTGTTTTAAGGTCATTGCTATGGAACCATCAGATGAACCAGTTCTTCGTGTCAATAAAACCTTAACTGCTTTGGTGTTAGTAGGGAGTTCCCCATCTGCCCTTCCTCCGGATTTGCTAATTGCTGGACCAGAAGGGACTGTGCCTTTGCAAAGGGACACAGTGAAGATCTTGGCTTCAATACTAGCACCAACTTTATGTCCAACTGCACTTTCTTCCAAGTTTAGAGTTTCAGTGTTATTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGACGACTAGGTCTGCATGTGGTGGAATATAACTGTCATGATCTAATGGGCTCCGAGAGAACATCTGTTGCTCTCACTCAAGTTTTCAAGACTGCTCAAAGATACTCGCCAACAATACTTCTTCTTCGTCATTTTGAGGTTTTCCAAGATTCGCAATCACCTGAGGTTTCACAAAATGATCAAAGAGGCAATACATCCGAAGTTGCATCAGTCATTAGGAAATTCACTGAGCCAGTTGGCGAACATGGTGATAGTAACCCTTTGGTGAAATCAAACGGCGAATTTGTGGAGAAGACTTCTGAAAAGACAAGTGGGCCCCAGGTCCTGTTGATTGCGGCTTCTGACAGTTCAGAGGGTCTACCTTCATCTATCAGACGCTGCTTTAGCCATGAAATAAACATGGGGCCTTTAACAGAAGAGCAAAGGGCTGAAATGCTATTGCATTCACTTCAAAATGTTTATGGACTCCACTCTAATACTGATCTAGACGGTTTTGTAAAAGAAATAGTTGGACAGACATCTGGTTTCATGCCCAGGGATATGTGTGCTTTAATTGCGGATGCTGGTGCCAGCTTATTTCCCAGGAACAATGCCGAAGTAGACAAAGATGAACCTGAAGATGCAGATAGTTCTCTTAGTTCCAAGGTAACGGAGGACAACAACCAGTCAAAAGTTTCAGCTCTGAAACCTGGGAAAGAAGACTTGGTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCAAATGTAAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTACCTCTCTTACATAAAGATCTATTTGCATCCGGATTACGCAAGCGGTCTGGTGTTCTTTTGTATGGCCCCCCTGGAACTGGCAAAACTTTATTAGCAAAAGCTGTTGCTACAGAATGCTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATAGGAGAATCTGAAAAGAATGTTCGAGACATTTTTCAGAAGGCCAGATCAGCACGTCCATGTGTCATATTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGAGCTTCCGGAGATTCTGGAGGTGTTATGGACAGAGTTGTTTCACAGATGCTTGCAGAAATTGATGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGATCCGGCACTTCTTCGCCCTGGTCGTTTTGATAAATTGTTATATGTTGGAGTTAACTCTGATGCATCATACAGAGAGAGGGTACTGAAAGCTCTAACGAGAAAGTTCAAATTGCATGAAGATGTTTCACTTTACGCCATTGCAAAAAAGTGTCCACCAAACTTCACCGGCGCAGACATGTATGCCTTGTGCGCAGATGCTTGGTTCCTCGCGGCAAAACGCAGGGTTTTGAATGCAGATCCAGAGTCCTCCAACCCAGATAATGAAGCAGATTCTATTGTAGTTGAATACGACGATTTTGTCCAGGTCTTAGAAGAGCTTCAGCCTTCCCTCTCTACGGCTGAGCTTAAGAAGTATGAGCTTCTTAGAGATCAGTTTGAAGGCACCTCTAAATGA 2766 0.4183 MVERRRKPLILCSTKHIINSVLKKSSTNEFPKLHLPVGILRFSNKLPSFDHSALIALSTSLLKRLSITSGSPVMVKNAEMNTQRIAVAIALDPPGSDTTTLDIDHSPSSSSRIMLVFPSCDFPLSDPLLNGEIAYLSPFLAFNLNLHISCLKSIIHNGQDALSSYFKRQCQVGDEDAAKSIEDFVINIELEPLAEPPRFASLLRVAFVKIPECGVLDSIKPTSDVESKERQDMIDLALQKYFEVDRYLSSKDIFGIDISWNCNSTICIPCNHKTQKKSDNFICFKVIAMEPSDEPVLRVNKTLTALVLVGSSPSALPPDLLIAGPEGTVPLQRDTVKILASILAPTLCPTALSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMGSERTSVALTQVFKTAQRYSPTILLLRHFEVFQDSQSPEVSQNDQRGNTSEVASVIRKFTEPVGEHGDSNPLVKSNGEFVEKTSEKTSGPQVLLIAASDSSEGLPSSIRRCFSHEINMGPLTEEQRAEMLLHSLQNVYGLHSNTDLDGFVKEIVGQTSGFMPRDMCALIADAGASLFPRNNAEVDKDEPEDADSSLSSKVTEDNNQSKVSALKPGKEDLVNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYAIAKKCPPNFTGADMYALCADAWFLAAKRRVLNADPESSNPDNEADSIVVEYDDFVQVLEELQPSLSTAELKKYELLRDQFEGTSK 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03135 921 Pfam ATPase family associated with various cellular activities (AAA) 675 807 IPR003959 GO:0005524|GO:0016887
Trre13g03135 921 Pfam ATPase family associated with various cellular activities (AAA) 360 512 IPR003959 GO:0005524|GO:0016887
Trre13g03135 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 915 IPR027417 -
Trre13g03135 921 Gene3D - 809 895 - -
Trre13g03135 921 Gene3D - 633 910 IPR027417 -
Trre13g03135 921 MobiDBLite consensus disorder prediction 575 591 - -
Trre13g03135 921 PANTHER AAA-FAMILY ATPASE 49 918 - -
Trre13g03135 921 ProSitePatterns AAA-protein family signature. 778 796 IPR003960 GO:0005524|GO:0016887
Trre13g03135 921 CDD RecA-like_PEX6_r2 647 806 IPR047533 -
Trre13g03135 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 584 IPR027417 -
Trre13g03135 921 Gene3D - 328 534 IPR027417 -
Trre13g03135 921 FunFam Peroxisomal biogenesis factor 6 633 822 - -
Trre13g03135 921 MobiDBLite consensus disorder prediction 574 603 - -
Trre13g03135 921 SMART AAA_5 671 811 IPR003593 GO:0016887
Trre13g03135 921 SMART AAA_5 356 516 IPR003593 GO:0016887
Trre13g03135 921 FunFam Peroxisome biogenesis protein 6 329 513 - -
Trre13g03135 921 FunFam Peroxisome biogenesis protein 6 809 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03135 Trre-Chr13 37697018 37703264 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03135 641 880 Calmodulin-binding Proteins AT3G56690 39.344 1.66e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03135 K13339 - gmx:100820183 1473.37