Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03131 ATGGCATCTAGCTCAATGTCAGCTTCTGGCTCATGGAGTGTTAAGGAGAATAAAGCCTTTGAAAGAGCTTTAGCTGTTTATGACAAAGATACTCCTGATCGTTGGTACAATGTAGCTCATGCTGTTGGTGGCAAAACTCCTGAGGAAGTTAAGAAACATTATGAACTTCTTGTTGAAGATATTAAACATATTGAGTCAGGGAAAGTTCCATTCCCAAATTACAAGAAAATTTCAGCTTCTCATGAAGAGAAAAGGATGAGGAACTTGAGTCTTAATTAA 279 0.3728 MASSSMSASGSWSVKENKAFERALAVYDKDTPDRWYNVAHAVGGKTPEEVKKHYELLVEDIKHIESGKVPFPNYKKISASHEEKRMRNLSLN 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03131 92 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Trre13g03131 92 SUPERFAMILY Homeodomain-like 5 63 IPR009057 -
Trre13g03131 92 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Trre13g03131 92 FunFam Transcription factor SRM1 4 71 - -
Trre13g03131 92 Gene3D - 2 71 - -
Trre13g03131 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 86 IPR044636 GO:0003700
Trre13g03131 92 SMART sant 8 60 IPR001005 -
Trre13g03131 92 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Trre13g03131 92 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03131 Trre-Chr13 37671681 37672264 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre13g03131 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03131 - - gmx:100818368 163.31