Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03130 ATGGACGACGACTCCCAATCCCAAACCGAAACCTACCTAGCAGGCTTCATAATGGCCAACATCGTCGGCCTAAGATACTACACCGGCACAATAAACGGCCGTGAAATCCTCGGCCTAGTTCGCGACCCACTCAACCATTACGACTCAAACGCCATCAAAGTTCTCAACACTCAATCCCTCCAAGTCGGTTTTATTGAACGCTCCGTCGCCGCCGTTCTTTCTCCGCTAATCGACGCTCATATCATTCAGATTGAAGGCATTGTTCAAACAAACACTCGCTCTAAGTTCCGTATCCCTTGTCAGATTCATATTTTCTCTCATATATCTTCTTTTGAAGCTGTTCATGACGCTTTTCATGGTTCTACTGTTCATTTCATTTCTCATTCTGATCCTTCTTTTACTCTTTCTCACTCTGTTGCTGTTCAAGAAACTCGAGCTGATTTAGCCTCCGCCGTAACAACCACCACCGGTAACAATAGAAGTAAAATCAAAACCCTAGATCAAATATTCAAACTCGTTCGCGAAAATCTAGATGCTAAAAACCTAATTTCTGAACCGTTAAGTCCTCCTTCTAACATAGTTAAATCAGAATTGCTTCAGCATCAAAAGGAAGCATTAGGATGGCATTTTCATCGCGAAAATTCCGATGTTTTACCGCCGTTTTGGGAAGAGAAAGAGGGGAGTTTTGTCAATGTGTTAACTAATTATCAAACTAGTACACGGCCGGAGTCTCTTCGTGGAGGGATATTCGCGGATGGGATGGGATTAGGGAAGACTTTGACATTGCTTTCGTTGATTGCTTTTGATAAAATGAAATGTGGGAAGAAAAGAAGTAGGAGTAGGGTTGAGATGAATAGTACATTGATTGTGTGTCCTCCTTCTGTGATTTCGACATGGATAACTCAGTTGGAAGAGCATACTAACCGTGGTGCGTTGAAGACTTATATGTATTATGGTGATAGAAGGACTCAAGATGCTGAGGAATTGAGAAAATATGATATTGTGTTGACAACTTATGCTACTTTGGGAGCTGAACTGCGGTGCCCGGATACTCCTGTGAAGACGTTGGAGTGGAGGAGGATTGTTTTGGATGAAGCGCATACGATTAAGAATGTTAATGCTGGACAGAGTCAGGCTGTTATTGGTTTGAATGGTAAGAGGAGATGGGCTGTTACTGGTACACCTATTCAGAATGGTTCTTATGATTTGTTTTCTCTTATGGCTTTTTTGCATTTTGAGCCTTTTTCTATTAAGAGTTATTGGCAAAACTTGGTTCAACGCCCGCTTACTCAAGGCAAACAGACAGGGCTTAGTCGATTGCAGGTTTTGATGGCAGCAATATCATTACGAAGAACAAAAGACACTGCATTGGTGGGGCTTCCACCCAAGATTGTAGAGACTTGTTATGTTGAACTTTCATGTGAAGAGCGTAAACTGTATGATGATGTTAAAGAGGAAATAAAGTCGCTTATGATGCATTATAACAGTAATGACAGATTAGTGTATAGTTACTCGACGATACTAAGTATGATTCTAAGACTTCGTCAGATCTGTACTGATATGTCGATGTGTCCTTTGGATTTCAAGTCGTGTCTATTTTCTTCAACTGATATTGAAGATGTTTCCAAGAACCCTGAATTGCTGCAAACATTAGTTCGTATGCTACAAGATGGTGAAGATTTTGATTGTCCAATTTGTTTATCTCCTCCAACGGATATTGTAATTACATGTTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTACAGCGCAGCAATTCCAGTTGTCCACTTTGTCGGCGCTCCCTCTCAGAATCTGACTTATTCTCAGCTCCCCCTGAATCTTCCAAGACCGATGAACTGGCCACACCAGAAGTAGGGTCATCCACAAAAGTCTCTACTTTGATAAAGCTTCTTACAGAATCAAGGGATAAAAATCCAGCTACCAAATCAGTTGTATTTTCACAATTCCGTAAAATGCTACTATTGTTAGAAGAGCCGTTAAAATCAGCTGGCTTTAAAACATTGCGTCTTGATGGGACACAGAATGCAAAACAAAGGGCTCAAGTTATTGAAAAATTTCAACTCTCAAAAATTGATGAGCCAATGATTCTGCTTGCAAGTCTCAAGTCTTCAAGTACAGGTATAAATCTTACGGCCGCCTCTAGAGTGTACTTAATGGAGCCATGGTGGAACCCAGCAGTTGAAGAACAAGCAATGGATCGCGTTCACCGCATTGGACAGAAAGAAGAAGTGAAGATTATTAGACTGATAGCTAAAAATAGCATTGAAGAGAAAATATTAAAGTTGCAAGAGAGGAAGAAAGAGATAACAAGCCAAGGATCTGGGAGGAGATCAAAAGATATTGCTGGTATGGGCATAGATGATCTCCATTTTGTTTTAGGAGAGTAG 2418 0.4078 MDDDSQSQTETYLAGFIMANIVGLRYYTGTINGREILGLVRDPLNHYDSNAIKVLNTQSLQVGFIERSVAAVLSPLIDAHIIQIEGIVQTNTRSKFRIPCQIHIFSHISSFEAVHDAFHGSTVHFISHSDPSFTLSHSVAVQETRADLASAVTTTTGNNRSKIKTLDQIFKLVRENLDAKNLISEPLSPPSNIVKSELLQHQKEALGWHFHRENSDVLPPFWEEKEGSFVNVLTNYQTSTRPESLRGGIFADGMGLGKTLTLLSLIAFDKMKCGKKRSRSRVEMNSTLIVCPPSVISTWITQLEEHTNRGALKTYMYYGDRRTQDAEELRKYDIVLTTYATLGAELRCPDTPVKTLEWRRIVLDEAHTIKNVNAGQSQAVIGLNGKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWQNLVQRPLTQGKQTGLSRLQVLMAAISLRRTKDTALVGLPPKIVETCYVELSCEERKLYDDVKEEIKSLMMHYNSNDRLVYSYSTILSMILRLRQICTDMSMCPLDFKSCLFSSTDIEDVSKNPELLQTLVRMLQDGEDFDCPICLSPPTDIVITCCAHIFCRECILKTLQRSNSSCPLCRRSLSESDLFSAPPESSKTDELATPEVGSSTKVSTLIKLLTESRDKNPATKSVVFSQFRKMLLLLEEPLKSAGFKTLRLDGTQNAKQRAQVIEKFQLSKIDEPMILLASLKSSSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIIRLIAKNSIEEKILKLQERKKEITSQGSGRRSKDIAGMGIDDLHFVLGE 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03130 805 SMART helicmild6 664 749 IPR001650 -
Trre13g03130 805 Pfam HIRAN domain 18 107 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre13g03130 805 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 151 802 - -
Trre13g03130 805 ProSiteProfiles Zinc finger RING-type profile. 563 602 IPR001841 -
Trre13g03130 805 CDD RING-HC_HLTF 558 610 - -
Trre13g03130 805 Gene3D - 461 794 IPR027417 -
Trre13g03130 805 SUPERFAMILY RING/U-box 559 611 - -
Trre13g03130 805 CDD SF2_C_SNF 631 760 - -
Trre13g03130 805 Pfam Helicase conserved C-terminal domain 633 749 IPR001650 -
Trre13g03130 805 Pfam Zinc finger, C3HC4 type (RING finger) 560 606 - -
Trre13g03130 805 Gene3D - 230 452 IPR038718 -
Trre13g03130 805 SMART ultradead3 229 420 IPR014001 -
Trre13g03130 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 804 IPR027417 -
Trre13g03130 805 SMART HIRAN_2 14 108 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre13g03130 805 Gene3D - 4 124 - -
Trre13g03130 805 SMART ring_2 563 601 IPR001841 -
Trre13g03130 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 613 IPR013083 -
Trre13g03130 805 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 633 792 IPR001650 -
Trre13g03130 805 Pfam SNF2-related domain 201 523 IPR000330 GO:0005524|GO:0140658
Trre13g03130 805 ProSitePatterns Zinc finger RING-type signature. 578 587 IPR017907 -
Trre13g03130 805 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 239 413 IPR014001 -
Trre13g03130 805 Coils Coil 762 782 - -
Trre13g03130 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 446 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03130 Trre-Chr13 37647432 37652786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03130 6 789 RAD5 or RAD16-like Gene Family AT5G05130 59.162 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g03130 SNF2_N 1.5e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03130 K15711 - fve:101311093 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03130 13 37647432 37652786 Trre13g03130 13 37647432 37652786 ECH