Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03129 ATGAAGTCAGAAGAGCTTGATCACTGGAGAAAGTACTTTCGTTCATCGAATTCCGACATCTTTAGCATCATTGATAATGCTATTGTTGTTGCTGCAAAGGATTGTCCTAAGGAGTTTAAGTCTAGGAGAGACAAAATTGCTGAGAAGCTGTTCTCAGTTTTGCTGAATCGTTGTAAGGACTGTGAGAAGGTGGAAGTGGCTGTTACTGATAATGAAAATGGTGAAGTTTGCAAGAGAGGTTCTGTTAAAATTGGTGCTAGCAAAGAGAGTAATGTGAATGGTGCTGGTAGTAGGGAAGAGGAAGATAATGAGGTGATGAAGGTGAAGCCTGCTAGCAATTATAGCTTTGATGAAGCTGAAGCTCTTACTGATGAGCTTGAGGCAGAATCTCAAGCTATTGCTGAGGTTTTGAGGATCAAAGAGATTCTCAGACACAAGGAAGATGAGCCTGAATCAGTGCTGTTTGAGTCACTAAGGAGGCTTGAACTCATGGGAATGTCTATGAATATTCTCGAGTCAACTGCGATCGGAAAGGCTGTCAATCCTCTCCGGAAGCATGGATCCAAGAAAGTTCGTGATCTTGCAAAGATTCTTATCGTTGCTTGGAAGGAAATGGTGGATACATTTTATGCCAAACGTGACCCAGATGCAGGAGAAAACACTCCGGAATCGTTAAATCCATCTGGCGTTGTGAATGCTGAAGAAGAACAAGAAGAAGAAGAAGGAGGACTTCCGTCAATTCCTTTGGACGAAGGTGCTTTCCTATTGGCTCCACCCGGAATGGAACTCTCTGATCAGTTCTTCGATGGCATGGATGATGATGGAAATATTCAAAAGAGTGTGCCACTCAACAAGAACCACGGCAATGGCAGAAGGCCAGCTATGGACACTGAAATTAAGGACAAGAGAAATGTGCCGGCATTTAATGAAACAGCCATCATTCCCAAGGACAATAAGAGTCAGCAGTTGAAGAAGAATGAGGCTGAAGTGAGGCTAAATAAACCGAAACCGGTAGCTGCTGATGCTGGCCCTCATAGATACCTAACGTCAAACATTCGGAGAAATGGCAATGTGGAGCCAAAGATGCAGCAGAAACTGGAAAGCAGTGCTGTCCCAAAGAGGCCTCTCAATGGTCAGCAAGATAATTCCAAATGTTCTGATGATGCTGCTAAGCTTGAAGCCACTAAGCGGAAACTTCAAGAGAGTTATCAACAAGCTGAAAATGCTAAGAGGCAAAGGACAATTCAAGTGATGGAAATCAATGAACTTCCAAAGCAAGGGGCTGCCCACCGGAACACACATTTCAAACCAGGAAATCAAAATAGGCAGCGGGGTCTTATGCGAAGATAG 1350 0.437 MKSEELDHWRKYFRSSNSDIFSIIDNAIVVAAKDCPKEFKSRRDKIAEKLFSVLLNRCKDCEKVEVAVTDNENGEVCKRGSVKIGASKESNVNGAGSREEEDNEVMKVKPASNYSFDEAEALTDELEAESQAIAEVLRIKEILRHKEDEPESVLFESLRRLELMGMSMNILESTAIGKAVNPLRKHGSKKVRDLAKILIVAWKEMVDTFYAKRDPDAGENTPESLNPSGVVNAEEEQEEEEGGLPSIPLDEGAFLLAPPGMELSDQFFDGMDDDGNIQKSVPLNKNHGNGRRPAMDTEIKDKRNVPAFNETAIIPKDNKSQQLKKNEAEVRLNKPKPVAADAGPHRYLTSNIRRNGNVEPKMQQKLESSAVPKRPLNGQQDNSKCSDDAAKLEATKRKLQESYQQAENAKRQRTIQVMEINELPKQGAAHRNTHFKPGNQNRQRGLMRR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03129 449 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 5 437 IPR044805 -
Trre13g03129 449 SMART TFS2_5 133 208 IPR003617 GO:0005634
Trre13g03129 449 MobiDBLite consensus disorder prediction 213 247 - -
Trre13g03129 449 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 134 218 IPR035441 -
Trre13g03129 449 Coils Coil 119 139 - -
Trre13g03129 449 MobiDBLite consensus disorder prediction 364 387 - -
Trre13g03129 449 Coils Coil 382 416 - -
Trre13g03129 449 Pfam TFIIS helical bundle-like domain 158 206 IPR017923 -
Trre13g03129 449 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 125 217 IPR035441 -
Trre13g03129 449 CDD TFIIS_I 133 207 - -
Trre13g03129 449 ProSiteProfiles TFIIS N-terminal domain profile. 134 209 IPR017923 -
Trre13g03129 449 MobiDBLite consensus disorder prediction 424 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03129 Trre-Chr13 37552554 37554952 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Trre13g03129 Med26 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03129 - - gmx:100799367 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03129 13 37552554 37554952 Trre13g03129 13 37552554 37554952 ECH