Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03123 ATGGCTTCAAAACCTATTGTTCCTCTACAACAACAACCCAGAGGTGATGCTGTAGTGGGGGGAGGGAAACCGCTGAAGAAGAATGGTGCAGCAGGCGAAGGAAGGAACCGAAGAGCACTTCTTGATATTGGAAATGTTGTCACTCTAAAAGGTGTTGATGTCAAGCCAAATCGCCCTGTCACTAGGAGTTTTTGTGCACAACTACTTGCTAATGCTCAAGCAGCGGCTGTTAATGAGAATAACAAGAAACAGGTTTGTGCCAATGTTCCTCCTACTGCTGTTGATGGAGTTGCAGCAGTTGCCAAAAGAGTGGCCCCTAAACCTGCTGTTCAGAAGAAAGTCATTGCAAAACCAAAACCTGTTGAAGTCATTCAAATCTCAGATGAAAAGGAGAATGAAGATAAGGCTGTGCACAAGAAAAAGGAAGCAGATGTTAATAATTCCAAGAAGAAACCATCACGCACTCTTACTTCTGTTCTCACAGCCAGAAGCAAGGCTGCATGTGGTTTGGCTAACAAACCAAAGGAAATTGTTGACATTGATGCTGGTGATGCTAACAATGAACTTGCTGCTGTTGAATATCTTGAAGATATTTACAAGTTCTATAAGATGATTGAGAATGAGAGCCGTCCACATGATTACATGGACTCACAGCCTGAGATAAATGAGAGAATGAGGGCAATACTCATTGATTGGCTAGTAGATGTTCACACCAAATTTGATCTTTCACCTGAAACCCTTTATCTCACAATCAACATTGTTGATAGGTTCCTAGCTGTCAAGCTTGTGCCAAGAAAAGAACTTCAATTGGTTGGAATCAGTGCTATGCTGATGGCATCAAAGTATGAAGAAATCTGGCCACCCGAGGTTAACGACTTTGTGACCCTCTCAGATTATGCTTACACTCATGAACAAATTCTTGTCATGGAGAAAACCATCCTAGGGAAACTTGAATGGACATTAACTGTGCCTACACCTTTTGTGTTCCTTATCCGTTTCATCAAAGCGGCATCGGTCCCTGGTGTTCCTTCTGATCAAGAACCATTGGAGAACATGGCTCATTTTCTTTCTGAATTGGGTATGATGCACTATGCTACCTTAATGTATTGTCCATCAATGGTTGCTGCAGCAGCAGTTTTTGCAGCAAGATGCACTTTGAACAAGAGTCCTGTTTGGAATGAGACACTGAAGATGCACACTGGTTACTCAGAAGAACAGTTAATGGATTGTGCTAAGTTGTTGACTAGTTTTCACTCTAATGTTGGGAATGGAAAGCTGAAGGTTCTCTATAGGAAGTACTCTGATCCTCAGAAAGGTGCTGTTGCTGTGCTTCCACCAGCAAAGAATCTTCTGCCTGCTGATGTTGGTTCTGTCTAG 1377 0.4241 MASKPIVPLQQQPRGDAVVGGGKPLKKNGAAGEGRNRRALLDIGNVVTLKGVDVKPNRPVTRSFCAQLLANAQAAAVNENNKKQVCANVPPTAVDGVAAVAKRVAPKPAVQKKVIAKPKPVEVIQISDEKENEDKAVHKKKEADVNNSKKKPSRTLTSVLTARSKAACGLANKPKEIVDIDAGDANNELAAVEYLEDIYKFYKMIENESRPHDYMDSQPEINERMRAILIDWLVDVHTKFDLSPETLYLTINIVDRFLAVKLVPRKELQLVGISAMLMASKYEEIWPPEVNDFVTLSDYAYTHEQILVMEKTILGKLEWTLTVPTPFVFLIRFIKAASVPGVPSDQEPLENMAHFLSELGMMHYATLMYCPSMVAAAAVFAARCTLNKSPVWNETLKMHTGYSEEQLMDCAKLLTSFHSNVGNGKLKVLYRKYSDPQKGAVAVLPPAKNLLPADVGSV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03123 458 MobiDBLite consensus disorder prediction 130 149 - -
Trre13g03123 458 Pfam Cyclin, N-terminal domain 197 321 IPR006671 -
Trre13g03123 458 ProSitePatterns Cyclins signature. 226 257 IPR006671 -
Trre13g03123 458 PIRSF Cyclin_A_B_D_E 1 458 IPR046965 GO:0016538|GO:0044772
Trre13g03123 458 SMART Cyclin_C_2 324 447 IPR004367 -
Trre13g03123 458 SUPERFAMILY Cyclin-like 186 321 IPR036915 -
Trre13g03123 458 CDD CYCLIN_AtCycB-like_rpt1 177 319 - -
Trre13g03123 458 PANTHER CYCLINS 142 435 IPR039361 -
Trre13g03123 458 MobiDBLite consensus disorder prediction 130 154 - -
Trre13g03123 458 Gene3D - 197 442 - -
Trre13g03123 458 SMART cyclin_7 328 416 IPR013763 -
Trre13g03123 458 SMART cyclin_7 231 315 IPR013763 -
Trre13g03123 458 MobiDBLite consensus disorder prediction 1 33 - -
Trre13g03123 458 Gene3D - 211 322 - -
Trre13g03123 458 SUPERFAMILY Cyclin-like 323 448 IPR036915 -
Trre13g03123 458 FunFam G2/mitotic-specific cyclin-1 312 442 - -
Trre13g03123 458 Pfam Cyclin, C-terminal domain 324 446 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03123 Trre-Chr13 37329903 37332082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03123 1 451 Core Cell Cycle Gene Families AT4G37490 53.118 5.27e-147 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03123 K21777 - gmx:547919 603.979