Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03122 ATGCCTTCTTCCACTTCAAAGCACAGTAATAGCAACAGCAGCAATAACAAGAAGCAATCAAAATCAAAATCAAGGTTACCACCGTCATTTCCCGACACCGCCACCACCACCGCCGCCGAACCACAACAATTGACCTCTCTCATCCAACAAGCTTCTCAAATCTTCCCATCCTTCATTTCACAATCCGCTTTCATCGCTCAAATCACCGACGTCGATTCCACCAATTCAACTTCCAAAGACGCTAAAATTTGGCTTTCTGAGCCTTCTATGGTTCAATCTTCTCTTGCTCCCGGTTCACTTGTCTCTGTGTCTATTCCTTCTTCAAGTAAAGAGATTGCGCAATTGCATGGATTTCCTCTCATTTCATTGACTAATGAATGTGTTAAATGCTATGGGTTGAAAACTTGTGCCACATTGGATGATGATGCTGCTGGAAACTACTTTGTTCTTGCAACGGTTTTTCCTTCTACAAAGGTATTGAAGAACGGAGTACGCCTGTCTTCAAATCTTTCCTTTGCGATGGGATGTCCTTCTTCGGGCACATGTGTGTTTGTTCACCCATTACAGAAACAATCTTTGGTATATAATTGCAAAGAATTATATCTTCAACTGGCTCCTTGTAAGAGTGGGCCACCATTGAAAGTTAATAATCTCCCCTCATCGGACTTGTCTAAGTCAAGATCCCGTGCCCAATCTGAGAATGATATTGTTGCATCTCCTAAAACACCTTCTTATGGATCAAAGTTTTCTAATGACAGTGTTTATTCTTCCCCCATATTTGAAGATTCAGCATCAAGTGTAACCAATTCCAATGGTCAATTGGTGGCTTCATTTGATGTTAGCAAGGCATTAGGAAATGAAAGTTCCAAAAAATTATTAGAAACATGCGCAACTTCATGGTTATACTCTCGTTGTATGTTGCTAGGGAATCTTGTCAATGTCCCAATGTTTTCTGAGTTTTGCATTTTCCAAGTGACGGGAATTAAAAGGGGGTCAACTAACCTACCTGACTATTGTCAATTGAATGGGAGCAGTGATTTAAATCTCGAGGATTCTGATATGCTAGAGAATGTGAATCTGGCTTTCACTGTCAATTGGGAAACAAAGGTATTTTTATCTTTGCCTTCAAATGCAACATTTGAAGAGTCAATTCAAAGGGATTTATCGTGTCTGAAACTTGATGACAAGGATGTTAAACCCCGGAGTGATAATATTTCTAAATTAGGCGGTCTATCTAAAGAAGAAATGCTTTTAAAGGAAATAATTTATTTTTCAAAGAACGATTTTTTACCAAGCTTTGATATGCAGAATACCAGAGGTGTCTTTCTTCATGGTCCACCTGGTACGGGAAAGACTTCGTTGGTTCGATTATGTGCTCATGATGCTGGGGTCAATTTTTTCTCAATAAATGGACCTGAAATTGTTACCCAGTACTATGGGGAAAGTGAGAAAGCATTGCATGATGTTTTTGATTCGGCCACTCAAGCTTCACCTGCCGTGATATTTATTGATGAAATAGATGCAATTGCCCCTCCAAGGAAAGATGGGGTTGAAGAGCTATCTAAAAGATTGGTTGGAACCTTGTTGGAACTGATGGATGGAATTAGTATAAATGGAGGATTAGTTGTAATTGCTGCTACAAATAGGCCTGACCATATTGATCCAGCTCTCAGACAGGGTGGAAGATTTGACAAGGATATTGAAATTGGTGTGCCATCAAAAGCGCAACGAGAAGATATTTTGCGTACTATTCTCTGTGAAATAGATCACTCTCTTTCTGAGACACAAATTGAAGAGCTTGCTTCAACAACTCATGGATTTGTTGGTGCTGATTTAGTTGGCCTCCGCAATTGCGCAAATACTATTTGTCTACAACATTCTATTGAAGTTAAACTTAAGAAGACTTGCAATGGTAGTTTGGATGACATAACAGAAGAACCCGCTCCGACGAATAGTGCAACAAACTTGAGTGACCATTCAGAAACTTTTGAAATTATAGAAAAGAGGCAAGTTACTTTTGAGGATTTTCAAAAGGCTAGGCTCGAAATAAGACCTAGTGCCATGAAAGAGGTGGCCCTTGAGGTTCCAAAGGTTAAATGGGAAGATATTGGCGGCCAAAGGGAAGTCAAAAACCAATTATTGGAAGCACTAGTATGGCCCCAAAAGCATCGGGATGCATTCACCCGTATTGGGACTGATGCTCCATCAGGTGTATTGATGTATGGGCCTCCAGGTTGTAGCAAAACCCTTATGGCACGTGCAGTTGCTTCTGAAGCAGGACTGAACTTTCTAGCAGTCAAGGGTCCCGAACTCTTCAGCAAATGGGTTGGCGAATCTGAGAAGGCTGTCAGATCATTGTTTGTTAAAGCAAAGGACAATGCCCCATCAGTAATATTTTTCGATGAAATAGATAGTCTTGCTATGAATCGTGGAAGAGATGGTGATGGTGTTTCGGTGTCCGATAGGGTCATGTCTCAACTCCTTGTTCAAATGGATGGTGTGCGTAGCAGAGGTGATGTTGCTGTTATAGCTGCTACAAATAGGCCAGACAATATTGACCCTGCCCTTTTAAGACCAGGACGCTTTGACCGTCAGCTATATGTTGGACCTCCAAATGAGAAGGACCGAGAAGAGATCTTTAGCATTCATTTGCGCAAAACTCCGTATGATTGTGATGTTAGCATGAAAGAACTGGCTCAACTGACCGATGGTTATACTGGGGCTGATATATCACTTATATGTCGACAAGCCGCTCTTGCAGCATTGGAGGAAAGCTTTGATGCTTCTGTTGTAACAATGAAGCACTTTAAGATGGCAATCGAACAAGTTCAGCCCTCCGAAATTCAGTTCTATCAAAAGTTCTCAGCAACATTTCATAGGGGCGTGCCCTCTGATGCGGCTGATATAAATCGTTAA 2916 0.4112 MPSSTSKHSNSNSSNNKKQSKSKSRLPPSFPDTATTTAAEPQQLTSLIQQASQIFPSFISQSAFIAQITDVDSTNSTSKDAKIWLSEPSMVQSSLAPGSLVSVSIPSSSKEIAQLHGFPLISLTNECVKCYGLKTCATLDDDAAGNYFVLATVFPSTKVLKNGVRLSSNLSFAMGCPSSGTCVFVHPLQKQSLVYNCKELYLQLAPCKSGPPLKVNNLPSSDLSKSRSRAQSENDIVASPKTPSYGSKFSNDSVYSSPIFEDSASSVTNSNGQLVASFDVSKALGNESSKKLLETCATSWLYSRCMLLGNLVNVPMFSEFCIFQVTGIKRGSTNLPDYCQLNGSSDLNLEDSDMLENVNLAFTVNWETKVFLSLPSNATFEESIQRDLSCLKLDDKDVKPRSDNISKLGGLSKEEMLLKEIIYFSKNDFLPSFDMQNTRGVFLHGPPGTGKTSLVRLCAHDAGVNFFSINGPEIVTQYYGESEKALHDVFDSATQASPAVIFIDEIDAIAPPRKDGVEELSKRLVGTLLELMDGISINGGLVVIAATNRPDHIDPALRQGGRFDKDIEIGVPSKAQREDILRTILCEIDHSLSETQIEELASTTHGFVGADLVGLRNCANTICLQHSIEVKLKKTCNGSLDDITEEPAPTNSATNLSDHSETFEIIEKRQVTFEDFQKARLEIRPSAMKEVALEVPKVKWEDIGGQREVKNQLLEALVWPQKHRDAFTRIGTDAPSGVLMYGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFVKAKDNAPSVIFFDEIDSLAMNRGRDGDGVSVSDRVMSQLLVQMDGVRSRGDVAVIAATNRPDNIDPALLRPGRFDRQLYVGPPNEKDREEIFSIHLRKTPYDCDVSMKELAQLTDGYTGADISLICRQAALAALEESFDASVVTMKHFKMAIEQVQPSEIQFYQKFSATFHRGVPSDAADINR 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03122 971 ProSitePatterns AAA-protein family signature. 840 858 IPR003960 GO:0005524|GO:0016887
Trre13g03122 971 MobiDBLite consensus disorder prediction 1 37 - -
Trre13g03122 971 Pfam AAA+ lid domain 892 937 IPR041569 -
Trre13g03122 971 Pfam ATPase family associated with various cellular activities (AAA) 441 570 IPR003959 GO:0005524|GO:0016887
Trre13g03122 971 Pfam ATPase family associated with various cellular activities (AAA) 738 869 IPR003959 GO:0005524|GO:0016887
Trre13g03122 971 Gene3D - 871 941 - -
Trre13g03122 971 Gene3D - 391 570 IPR027417 -
Trre13g03122 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 629 IPR027417 -
Trre13g03122 971 FunFam spermatogenesis-associated protein 5-like protein 1 871 953 - -
Trre13g03122 971 PANTHER AAA-FAMILY ATPASE 79 959 - -
Trre13g03122 971 MobiDBLite consensus disorder prediction 218 238 - -
Trre13g03122 971 FunFam Putative vesicular transport protein (CDC48) 392 570 - -
Trre13g03122 971 Gene3D - 695 946 IPR027417 -
Trre13g03122 971 SMART AAA_5 437 573 IPR003593 GO:0016887
Trre13g03122 971 SMART AAA_5 734 872 IPR003593 GO:0016887
Trre13g03122 971 FunFam calmodulin-interacting protein 111 isoform X1 695 870 - -
Trre13g03122 971 Gene3D - 572 685 - -
Trre13g03122 971 CDD RecA-like_CDC48_r2-like 709 868 - -
Trre13g03122 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 948 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03122 Trre-Chr13 37316164 37326805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03122 15 965 Calmodulin-binding Proteins AT3G56690 49.951 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03122 - - psat:127126471 1392.87