Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03121 ATGCCTTCTTCCACTTCAAAGCACAGTAATAGCAACAGCAGCAATAACAAGAAGCAATCAAAATCAAAATCAAGGTTACCACCGTCATTTCCCGACACCGCCACCACCACCGCCGCCGAACCACAACAATTGACCTCTCTCATCCAACAAGCTTCTCAAATCTTCCCATCCTTCATTTCACAATCCGCTTTCATCGCTCAAATCACCGACGTCGATTCCACCAATTCAACTTCCAAAGACGCTAAAATTTGGCTTTCTGAGCCTTCTATGGTTCAATCTTCTCTTGCTCCCGGTTCACTTGTCTCTGTGTCTATTCCTTCTTCAAGTAAAGAGATTGCGCAATTGCATGGATTTCCTCTCATTTCATTGACTAATGAATGTGTTAAATGCTATGGGTTGAAAACTTGTGCCACATTGGATGATGATGCTGCTGGAAACTACTTTGTTCTTGCAACGGTTTTTCCTTCTACAAAGGTATTGAAGAACGGAGTACGCCTGTCTTCAAATCTTTCCTTTGCGATGGGATGTCCTTCTTCGGGCACATGTGTGTTTGTTCACCCATTACAGAAACAATCTTTGGTATATAATTGCAAAGAATTATATCTTCAACTGGCTCCTTGTAAGAGTGGGCCACCATTGAAAGTTAATAATCTCCCCTCATCGGACTTGTCTAAGTCAAGATCCCGTGCCCAATCTGAGAATGATATTGTTGCATCTCCTAAAACACCTTCTTATGGATCAAAGTTTTCTAATGACAGTGTTTATTCTTCCCCCATATTTGAAGATTCAGCATCAAGTGTAACCAATTCCAATGGTCAATTGGTGGCTTCATTTGATGTTAGCAAGGCATTAGGAAATGAAAGTTCCAAAAAATTATTAGAAACATGCGCAACTTCATGGTTATACTCTCGTTGTATGTTGCTAGGGAATCTTGTCAATGTCCCAATGTTTTCTGAGTTTTGCATTTTCCAAGTGACGGGAATTAAAAGGGGGTCAACTAACCTACCTGACTATTGTCAATTGAATGGGAGCAGTGATTTAAATCTCGAGGATTCTGATATGCTAGAGAATGTGAATCTGGCTTTCACTGTCAATTGGGAAACAAAGGTATTTTTATCTTTGCCTTCAAATGCAACATTTGAAGAGTCAATTCAAAGGGATTTATCGTGTCTGAAACTTGATGACAAGGATGTTAAACCCCGGAGTGATAATATTTCTAAATTAGGCGGTCTATCTAAAGAAGAAATGCTTTTAAAGGAAATAATTTATTTTTCAAAGAACGATTTTTTACCAAGCTTTGATATGCAGAATACCAGAGGTGTCTTTCTTCATGGTCCACCTGGTACGGGAAAGACTTCGTTGGTTCGATTATGTGCTCATGATGCTGGGGTCAATTTTTTCTCAATAAATGGACCTGAAATTGTTACCCAGTACTATGGGGAAAGTGAGAAAGCATTGCATGATGTTTTTGATTCGGCCACTCAAGCTTCACCTGCCGTGATATTTATTGATGAAATAGATGCAATTGCCCCTCCAAGGAAAGATGGGGTTGAAGAGCTATCTAAAAGATTGGTTGGAACCTTGTTGGAACTGATGGATGGAATTAGTATAAATGGAGGATTAGTTGTAATTGCTGCTACAAATAGGCCTGACCATATTGATCCAGCTCTCAGACAGGGTGGAAGATTTGACAAGGATATTGAAATTGGTGTGCCATCAAAAGCGCAACGAGAAGATATTTTGCGTACTATTCTCTGTGAAATAGATCACTCTCTTTCTGAGACACAAATTGAAGAGCTTGCTTCAACAACTCATGGATTTGTTGGTGCTGATTTAGTTGGCCTCCGCAATTGCGCAAATACTATTTGTCTACAACATTCTATTGAAGTTAAACTTAAGAAGACTTGCAATGGTAGTTTGGATGACATAACAGAAGAACCCGCTCCGACGAATAGTGCAACAAACTTGAGTGACCATTCAGAAAAGAGGCAAGTTACTTTTGAGGATTTTCAAAAGGCTAGGCTCGAAATAAGACCTAGTGCCATGAAAGAGGTGGCCCTTGAGGTTCCAAAGGTTAAATGGGAAGATATTGGCGGCCAAAGGGAAGTCAAAAACCAATTATTGGAAGCACTAGTATGGCCCCAAAAGCATCGGGATGCATTCACCCGTATTGGGACTGATGCTCCATCAGGTGTATTGATGTATGGGCCTCCAGGTTGTAGCAAAACCCTTATGGCACGTGCAGTTGCTTCTGAAGCAGGACTGAACTTTCTAGCAGTCAAGGGTCCCGAACTCTTCAGCAAATGGGTTGGCGAATCTGAGAAGGCTGTCAGATCATTGTTTGTTAAAGCAAAGGACAATGCCCCATCAGTAATATTTTTCGATGAAATAGATAGTCTTGCTATGAATCGTGGAAGAGATGGTGATGGTGTTTCGGTGTCCGATAGGGTCATGTCTCAACTCCTTGTTCAAATGGATGGTGTGCGTAGCAGAGGTGATGTTGCTGTTATAGCTGCTACAAATAGGCCAGACAATATTGACCCTGCCCTTTTAAGACCAGGACGCTTTGACCGTCAGCTATATGTTGGACCTCCAAATGAGAAGGACCGAGAAGAGATCTTTAGCATTCATTTGCGCAAAACTCCGTATGATTGTGATGTTAGCATGAAAGAACTGGCTCAACTGACCGATGGTTATACTGGGGCTGATATATCACTTATATGTCGACAAGCCGCTCTTGCAGCATTGGAGGAAAGCTTTGATGCTTCTGTTGTAACAATGAAGCACTTTAAGATGGCAATCGAACAAGTTCAGCCCTCCGAAATTCAGTTCTATCAAAAGTTCTCAGCAACATTTCATAGGGGCGTGCCCTCTGATGCGGCTGATATAAATCGTTAA 2898 0.4127 MPSSTSKHSNSNSSNNKKQSKSKSRLPPSFPDTATTTAAEPQQLTSLIQQASQIFPSFISQSAFIAQITDVDSTNSTSKDAKIWLSEPSMVQSSLAPGSLVSVSIPSSSKEIAQLHGFPLISLTNECVKCYGLKTCATLDDDAAGNYFVLATVFPSTKVLKNGVRLSSNLSFAMGCPSSGTCVFVHPLQKQSLVYNCKELYLQLAPCKSGPPLKVNNLPSSDLSKSRSRAQSENDIVASPKTPSYGSKFSNDSVYSSPIFEDSASSVTNSNGQLVASFDVSKALGNESSKKLLETCATSWLYSRCMLLGNLVNVPMFSEFCIFQVTGIKRGSTNLPDYCQLNGSSDLNLEDSDMLENVNLAFTVNWETKVFLSLPSNATFEESIQRDLSCLKLDDKDVKPRSDNISKLGGLSKEEMLLKEIIYFSKNDFLPSFDMQNTRGVFLHGPPGTGKTSLVRLCAHDAGVNFFSINGPEIVTQYYGESEKALHDVFDSATQASPAVIFIDEIDAIAPPRKDGVEELSKRLVGTLLELMDGISINGGLVVIAATNRPDHIDPALRQGGRFDKDIEIGVPSKAQREDILRTILCEIDHSLSETQIEELASTTHGFVGADLVGLRNCANTICLQHSIEVKLKKTCNGSLDDITEEPAPTNSATNLSDHSEKRQVTFEDFQKARLEIRPSAMKEVALEVPKVKWEDIGGQREVKNQLLEALVWPQKHRDAFTRIGTDAPSGVLMYGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFVKAKDNAPSVIFFDEIDSLAMNRGRDGDGVSVSDRVMSQLLVQMDGVRSRGDVAVIAATNRPDNIDPALLRPGRFDRQLYVGPPNEKDREEIFSIHLRKTPYDCDVSMKELAQLTDGYTGADISLICRQAALAALEESFDASVVTMKHFKMAIEQVQPSEIQFYQKFSATFHRGVPSDAADINR 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03121 965 MobiDBLite consensus disorder prediction 644 660 - -
Trre13g03121 965 MobiDBLite consensus disorder prediction 1 37 - -
Trre13g03121 965 Gene3D - 692 940 IPR027417 -
Trre13g03121 965 MobiDBLite consensus disorder prediction 642 662 - -
Trre13g03121 965 SMART AAA_5 437 573 IPR003593 GO:0016887
Trre13g03121 965 SMART AAA_5 728 866 IPR003593 GO:0016887
Trre13g03121 965 Pfam AAA+ lid domain 886 931 IPR041569 -
Trre13g03121 965 Pfam ATPase family associated with various cellular activities (AAA) 732 863 IPR003959 GO:0005524|GO:0016887
Trre13g03121 965 Pfam ATPase family associated with various cellular activities (AAA) 441 570 IPR003959 GO:0005524|GO:0016887
Trre13g03121 965 Gene3D - 572 691 - -
Trre13g03121 965 Gene3D - 391 570 IPR027417 -
Trre13g03121 965 Gene3D - 865 935 - -
Trre13g03121 965 CDD RecA-like_CDC48_r2-like 703 862 - -
Trre13g03121 965 FunFam Putative vesicular transport protein (CDC48) 392 570 - -
Trre13g03121 965 ProSitePatterns AAA-protein family signature. 834 852 IPR003960 GO:0005524|GO:0016887
Trre13g03121 965 PANTHER AAA-FAMILY ATPASE 79 953 - -
Trre13g03121 965 FunFam calmodulin-interacting protein 111 isoform X1 689 864 - -
Trre13g03121 965 MobiDBLite consensus disorder prediction 218 238 - -
Trre13g03121 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 683 IPR027417 -
Trre13g03121 965 FunFam spermatogenesis-associated protein 5-like protein 1 865 947 - -
Trre13g03121 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 942 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03121 Trre-Chr13 37316164 37326805 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03121 15 959 Calmodulin-binding Proteins AT3G56690 50.049 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03121 - - psat:127126471 1384.39