Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03120 ATGAGAGAAGACGATTCAAATTGGTTTTCAAGATGGGAAGAACAACTCCCTTCACCTGATGAACTCATGCCTTTATCACAAACCCTAATCACCCCTGATCTGGCCATAGCTTTTGACATCAGAAACAACATCAACAATAACACACACAACACAATCAACAACATTAACCACACAAACCCACAACAACAACAACATCATCAACATCAAAATCAAAATCAACAACAGCAACAACAACCTCAACCTTCTTCACTTCCTTCTTCAACCGATTTTGCTGATTCCGGCGAACTAGGTTCCGGCACAGCCGGCGAAGAACCAGCAAGAACACTCAAAAGACCTCGTCTTGTATGGACCCCACAACTCCACAAACGTTTCGTCGATGCAGTGGCACATCTCGGAATAAAAAACGCTGTTCCAAAGACGATAATGCAGCTTATGAGTGTTGATGGTTTGACAAGAGAAAACGTCGCGAGTCACTTGCAAAAATATCGTCTTTATCTTAAACGCATGCAGGGGATTTCTTCCGGTGGAGGTGGTGGTTCTGGTGGTGGTTCTGCCGCTGTTAATGACCCTGCTACTGACCATTTATTTGCTAGCTCCCCTGTGCCGCCGCATTTTCTGCATCCGGTTGCTCGGCCTAATTCGGATCATTTTATGCCTTTTGTTCCTGTTCCTGCTATTCACCATCAGCAGCAGATGGCTGCTGCTGCTGCTCAGTATCACCGGCCAGCCGGGCATTTTGGGTCGCCGCCGAATGGACACTTTGAGAATCCTTTCTTGTCTAGACATCAACAGCAACACCAACATCAACATCAGCAGCAGCAGCAGCTTCATAGGATTGGTGGACAAATGCATCATAACCCTGTTGGTGGTTATGTGGAGGATATGGAATCAGCTAATGCATCAGGAGGGAGAAAGGTTCTTACTTTGTTTCCAACAGGAGATGATTGA 948 0.4589 MREDDSNWFSRWEEQLPSPDELMPLSQTLITPDLAIAFDIRNNINNNTHNTINNINHTNPQQQQHHQHQNQNQQQQQQPQPSSLPSSTDFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGGGGGSGGGSAAVNDPATDHLFASSPVPPHFLHPVARPNSDHFMPFVPVPAIHHQQQMAAAAAQYHRPAGHFGSPPNGHFENPFLSRHQQQHQHQHQQQQQLHRIGGQMHHNPVGGYVEDMESANASGGRKVLTLFPTGDD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03120 315 Gene3D - 108 170 - -
Trre13g03120 315 MobiDBLite consensus disorder prediction 257 280 - -
Trre13g03120 315 MobiDBLite consensus disorder prediction 245 315 - -
Trre13g03120 315 SUPERFAMILY Homeodomain-like 108 168 IPR009057 -
Trre13g03120 315 Pfam Myb-like DNA-binding domain 115 163 IPR001005 -
Trre13g03120 315 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 294 IPR044841 GO:0003700|GO:0006355
Trre13g03120 315 FunFam Two-component response regulator 107 170 - -
Trre13g03120 315 MobiDBLite consensus disorder prediction 48 110 - -
Trre13g03120 315 MobiDBLite consensus disorder prediction 48 94 - -
Trre13g03120 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 112 164 IPR006447 GO:0003677
Trre13g03120 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 167 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03120 Trre-Chr13 37306913 37307860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03120 1 315 G2-like Transcription Factor Family AT3G10760 57.263 1.69e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre13g03120 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03120 - - gmx:100815363 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03120 13 37306913 37307860 Trre13g03120 13 37306913 37307860 ECH