Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03116 ATGTGTAGAGAGACTGAGAGCTGCACGAGCAGCAGCAACAGTCAACGGAAAGCGGAGGAAGTGATTATTGGAAACGCAAAAGCTATACAAAAACTCAGAGAACTCATAACATTACCTCTTCTCTTCCCTCACGAGGCAAATAAGCTGCAAACAGGTTTGTTGCTGTGTGGTCCTCCTGGCACTGGAAAGAGAAGTTTAGTACGGGCAGTTGTTGAGGAATGTGGAGCAACTTTGACAATTATCAGCCCAGACACTGTTTACAGCGCAAATGCGGGTGAAAGTGAGAGAACTCTCCGTGAGGCTTTTTCAGAGGCATCATCTCATACAGCCTTGGGCAAGTCTTCAGTTATCTTTATAGATCAAATAGATACACTTTGTCCTCCCCGAAACTCCAAAAGAGGGCAAGATGTCCGAATTGCTTCCCAACTTGGTATTTTGATGGACTCGAGCAAAGCAACCTCCTATACGCCAGGGGTAGTTGTGGTTGCATCAACTAACAGTGTTGATGCAATTGACCCTGCTTTAAGAAGATATGGACGTTTTGATATTGAAACTGAAGTTACAGTCCCAAATAAAAAGGAGCGCCTTCAAATTCTAGAGCTGTATACAAGAAAGATCCCTCGGAATTCATGCGACTTAGAATCCATTGCGGCATCATGCAATGGATATGTCGGTGCTGATTTATGGGCTTTGTGTCGTGAAGCTATCAAATCCGCAGTTAGAAGGTCTTTAAATGCAAAGAAAGATGTCAAAAAAGACTCCAGTTTAATGATGGAAGATTGGAAGACTGCAAGCTCTCTTGTTCAACCAAGTATAACAAGAGGCATTACTGTGGAAATTCCCGATGTGACTTGGAAAGATATCGGTGGATTGAAAGATGTGAAGACAAAGCTCAAGCAAGCTGTTGAGTGGCCTATGAAGCATCCTGCTGCGTTTTCAAGATTGGGAATAACCCCTAATCGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACTCTTGCTAAAGCTGCTGCAAATGCTGCTAATGTTCCTTTCTTTTCCTTGAGTTGTGCAGATGTACGTTCAAAGTATGTCGGAGATGCAGAAAGTTATCTTCGTGAAATATTTCGCAAAGCACGGCTTGCCGGAAAAAGTATAATATTTTTTGATGAAGTTGATTCAGTAGCTGGCAAACGGGGTGATAGTTCGAGCAGTAGTTCCGCAGCTGATGAGAGGCTTTTATCTACTCTGCTGACTGAGATGGATGGTTTAGAAGAAGCCAAAGGCGTCCTTGTTTTTGCAGCTACAAATCGCCCTTATTTACTTGATGCCGCACTTATGCGTCCTGGACGATTTGATATGATTTTGTATGTGCCACCACCTGATTTGGAGGGTCGATTGGAGATACTGAACGTACACACACGTAGGATGATATTGCAGAGTGATGTTGATCTTAGAAAACTAGCAGAAGATACCGAGCTCTTCACAGGTGCTGAGCTAGCGGGATTGTGTAGAGAAGTTGGAACAGCAGCTCTAAGGGAAAACATTGACGCGAGTGTTGTTTTTGACCGTCACTTCCAGATTGTTAAGAATGCTTTAAATCCAACATTAACAAAAGAAGCAATTGATTCATACTCGTCGTTTAGGAAGACCTCATCTCGAAGTGTTGCCTAG 1662 0.4326 MCRETESCTSSSNSQRKAEEVIIGNAKAIQKLRELITLPLLFPHEANKLQTGLLLCGPPGTGKRSLVRAVVEECGATLTIISPDTVYSANAGESERTLREAFSEASSHTALGKSSVIFIDQIDTLCPPRNSKRGQDVRIASQLGILMDSSKATSYTPGVVVVASTNSVDAIDPALRRYGRFDIETEVTVPNKKERLQILELYTRKIPRNSCDLESIAASCNGYVGADLWALCREAIKSAVRRSLNAKKDVKKDSSLMMEDWKTASSLVQPSITRGITVEIPDVTWKDIGGLKDVKTKLKQAVEWPMKHPAAFSRLGITPNRGILLHGPPGCSKTTLAKAAANAANVPFFSLSCADVRSKYVGDAESYLREIFRKARLAGKSIIFFDEVDSVAGKRGDSSSSSSAADERLLSTLLTEMDGLEEAKGVLVFAATNRPYLLDAALMRPGRFDMILYVPPPDLEGRLEILNVHTRRMILQSDVDLRKLAEDTELFTGAELAGLCREVGTAALRENIDASVVFDRHFQIVKNALNPTLTKEAIDSYSSFRKTSSRSVA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03116 553 Pfam ATPase family associated with various cellular activities (AAA) 323 455 IPR003959 GO:0005524|GO:0016887
Trre13g03116 553 Pfam ATPase family associated with various cellular activities (AAA) 53 187 IPR003959 GO:0005524|GO:0016887
Trre13g03116 553 ProSitePatterns AAA-protein family signature. 426 444 IPR003960 GO:0005524|GO:0016887
Trre13g03116 553 FunFam spermatogenesis-associated protein 5-like protein 1 457 543 - -
Trre13g03116 553 Gene3D - 273 457 IPR027417 -
Trre13g03116 553 Pfam AAA+ lid domain 478 522 IPR041569 -
Trre13g03116 553 Pfam AAA+ lid domain 212 246 IPR041569 -
Trre13g03116 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 245 IPR027417 -
Trre13g03116 553 PANTHER AAA-FAMILY ATPASE 18 548 - -
Trre13g03116 553 SMART AAA_5 319 458 IPR003593 GO:0016887
Trre13g03116 553 SMART AAA_5 49 191 IPR003593 GO:0016887
Trre13g03116 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 514 IPR027417 -
Trre13g03116 553 Gene3D - 458 549 - -
Trre13g03116 553 Gene3D - 190 272 - -
Trre13g03116 553 FunFam Cell division control protein 48-B-like protein 273 457 - -
Trre13g03116 553 Gene3D - 8 188 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03116 Trre-Chr13 37235669 37240659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03116 255 532 Calmodulin-binding Proteins AT3G56690 44.964 3.20e-77 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03116 - - vra:106755317 695.656