Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03088 ATGATTTCTCTACAATTTGGTTTTGCTGGTATGAACATAATCACAAAGGTTTCACTCAACCGAGGAATGAGTCATTATGTTCTTGTTGTTTATAGACATGCTTTTGCAACTGCAGCTATTGCTCCTTTTGCTATAGTTCTTGAGAGGAAGATAAGGCCAAGGATTACATTTCTTATGTTCATGCAAATGTTTGTGTTGGGACTCCTCGGGCCTGTGATTGATCAAAACCTATACTATGCTGGGTTGAAATTCACTTCCCCAACCTACTCTTGTGCTATTAGCAATGTTCTCCCTGCAATGACATTTGTAATGGCAGTTATTTTCAGGATGGAGAAATTGGACATTAAAAAATTAAGATGCCAAGTAAAGGTGATTGGAACTATAATTACAGTTGCTGGGGCCATGGTGATGACATTATACAAAGGACAAGTTATTAATATATTGGGATCTCAATACATGCATCATCCTAGAAATTATGTACCTGAAAACACTACTGATTCTGGTGAAAAGGATTGGTTTAAGGGTTCTGTTCTTCTCATAATTGCTACATTTGCTTGGGCTTCTTTCTTCATTCTTCAGGCTGTGACATTAAGGCAATATTCAGCTCAACTCTCACTTACAGCCATAGTGTGTTTCTTGGGCACACTTCAATCAATTGCTGTTACCTATGTTATGGAGCATAACCCAAATGTTTGGAACATTGGTTGGGACATGAACCTATTAGCTGCAGCCTATGCTGGTATAATATCATCAGGTCTTACATACTATGTTCAAGGGATTGTGATGCAAAAGAAAGGGCCAGTTTTTGTCACTGCTTTTAGTCCTTTGATGATGATCATTGTGGCAATAATGGGCACTTTCATTCTTGCAGAAAAATTATATCTTGGAGGTATTATTGGAGCAATTTTGATCGTAATAGGACTATATTCAGTTCTATGGGGCAAAAACAAAGAAAATAAAGAGATTGAAGCAGAGACTGAGGAAATTAAGTGTTGTAGAGAAAATGGAGTGATGGAAACAGTAATTGAAGGTGTTGAAACAAATGACATTGAGATGCAAAATGGTGAAGTTAATAGTAAAGTATTAAGGGTAGCTATTATTAGTGTTCCAAAAGTTTAA 1119 0.3664 MISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNVLPAMTFVMAVIFRMEKLDIKKLRCQVKVIGTIITVAGAMVMTLYKGQVINILGSQYMHHPRNYVPENTTDSGEKDWFKGSVLLIIATFAWASFFILQAVTLRQYSAQLSLTAIVCFLGTLQSIAVTYVMEHNPNVWNIGWDMNLLAAAYAGIISSGLTYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGTFILAEKLYLGGIIGAILIVIGLYSVLWGKNKENKEIEAETEEIKCCRENGVMETVIEGVETNDIEMQNGEVNSKVLRVAIISVPKV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03088 372 Coils Coil 315 335 - -
Trre13g03088 372 Pfam EamA-like transporter family 174 312 IPR000620 GO:0016020
Trre13g03088 372 Pfam EamA-like transporter family 8 138 IPR000620 GO:0016020
Trre13g03088 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 236 317 - -
Trre13g03088 372 PANTHER WAT1-RELATED PROTEIN 1 324 IPR030184 GO:0016020|GO:0022857
Trre13g03088 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 31 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03088 Trre-Chr13 36721012 36723833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03088 1 370 Nodulin-like Gene Family AT5G07050 62.299 8.61e-173 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03088 - - gmx:100793545 602.053