Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03087 ATGGAAGGAGAAAAGTGTTGTTCAAGTTTTTTTCAAAGATGCAAACCTTACATAGCTATGATTTCTCTACAATTTGGTTTTGCTGGTATGAACATAATCACAAAGGTTTCACTCAACCGAGGAATGAGTCATTATGTTCTTGTTGTTTATAGACATGCTTTTGCAACTGCAGCTATTGCTCCTTTTGCTATAGTTCTTGAGAGGAAGATAAGGCCAAGGATTACATTTCTTATGTTCATGCAAATGTTTGTGTTGGGACTCCTCGGGCCTGTGATTGATCAAAACCTATACTATGCTGGGTTGAAATTCACTTCCCCAACCTACTCTTGTGCTATTAGCAATGTTCTCCCTGCAATGACATTTGTAATGGCAGTTATTTTCAGGATGGAGAAATTGGACATTAAAAAATTAAGATGCCAAGTAAAGGTGATTGGAACTATAATTACAGTTGCTGGGGCCATGGTGATGACATTATACAAAGGACAAGTTATTAATATATTGGGATCTCAATACATGCATCATCCTAGAAATTATGTACCTGAAAACACTACTGATTCTGGTGAAAAGGATTGGTTTAAGGGTTCTGTTCTTCTCATAATTGCTACATTTGCTTGGGCTTCTTTCTTCATTCTTCAGGCTGTGACATTAAGGCAATATTCAGCTCAACTCTCACTTACAGCCATAGTGTGTTTCTTGGGCACACTTCAATCAATTGCTGTTACCTATGTTATGGAGCATAACCCAAATGTTTGGAACATTGGTTGGGACATGAACCTATTAGCTGCAGCCTATGCTGGTATAATATCATCAGGTCTTACATACTATGTTCAAGGGATTGTGATGCAAAAGAAAGGGCCAGTTTTTGTCACTGCTTTTAGTCCTTTGATGATGATCATTGTGGCAATAATGGGCACTTTCATTCTTGCAGAAAAATTATATCTTGGAGGTATTATTGGAGCAATTTTGATCGTAATAGGACTATATTCAGTTCTATGGGGCAAAAACAAAGAAAATAAAGAGATTGAAGCAGAGACTGAGGAAATTAAGTGTTGTAGAGAAAATGGAGTGATGGAAACAGTAATTGAAGGTGTTGAAACAAATGACATTGAGATGCAAAATGGTGAAGTTAATAGTAAAGTATTAAGGGTAGCTATTATTAGTGTTCCAAAAGTTTAA 1176 0.3648 MEGEKCCSSFFQRCKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNVLPAMTFVMAVIFRMEKLDIKKLRCQVKVIGTIITVAGAMVMTLYKGQVINILGSQYMHHPRNYVPENTTDSGEKDWFKGSVLLIIATFAWASFFILQAVTLRQYSAQLSLTAIVCFLGTLQSIAVTYVMEHNPNVWNIGWDMNLLAAAYAGIISSGLTYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGTFILAEKLYLGGIIGAILIVIGLYSVLWGKNKENKEIEAETEEIKCCRENGVMETVIEGVETNDIEMQNGEVNSKVLRVAIISVPKV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03087 391 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020
Trre13g03087 391 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Trre13g03087 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 255 336 - -
Trre13g03087 391 Coils Coil 334 354 - -
Trre13g03087 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 160 - -
Trre13g03087 391 PANTHER WAT1-RELATED PROTEIN 15 343 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03087 Trre-Chr13 36721012 36723890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03087 1 389 Nodulin-like Gene Family AT5G07050 61.578 6.31e-180 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03087 - - gmx:100793545 634.795