Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03083 ATGTCACACATATCAAATCAAATTGCAAAGGGGAAGGCTCCAATGATTGAAGAATCTCAATCCAATGTGGATAATCAAAACAAGAGGAAATCAATTGTGGTCGAAGAGAGTGTTGCAATTCAAAAGAAATGTTACAAATGTGTCTATTGTGAAAAATCATTTGATACTCCACAAGCCCTAGGAGGGCACCATCGTAGTCACAAAAATGAACGAAATGTCAAGCCTAGGCTTACCCCTAATTCAAGGGGAAAAGAGAGATTTAGCACTGAAAAATGTAAGGTTATAATGGCAAATATTGATGCATGGTTTAAGGCTAATAGGATGAATGATCCATAA 336 0.3661 MSHISNQIAKGKAPMIEESQSNVDNQNKRKSIVVEESVAIQKKCYKCVYCEKSFDTPQALGGHHRSHKNERNVKPRLTPNSRGKERFSTEKCKVIMANIDAWFKANRMNDP 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03083 111 Gene3D Classic Zinc Finger 18 102 - -
Trre13g03083 111 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Trre13g03083 111 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Trre13g03083 111 MobiDBLite consensus disorder prediction 58 86 - -
Trre13g03083 111 MobiDBLite consensus disorder prediction 1 27 - -
Trre13g03083 111 MobiDBLite consensus disorder prediction 61 86 - -
Trre13g03083 111 Pfam C2H2-type zinc finger 45 68 - -
Trre13g03083 111 SUPERFAMILY beta-beta-alpha zinc fingers 41 73 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03083 Trre-Chr13 36633058 36633393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03083 23 76 C2H2 Transcription Factor Family AT5G25160 38.889 2.47e-09 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g03083 zf-C2H2_6 3.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03083 - - psat:127130587 76.6405