Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03059 ATGTTGTTTGGGGTCAAGCACACTCAAGAGACTTGCCAGATTTGGTGGAATATGAAAGCTAATAAGATTTATGACTTTGCAGCTGAAGATGCAAAGGTGATAGCATTATCTCCCAAGACCCTAATGGCAACAAACATGTATATTTGTGAGGTATGCAACAAAGAATTCCAAAGAGAGCAAAACCTACAACAGCACATAACAGGACACAATTTGCCTTGGAAACTTAGAAGACATAAAAGAGCCTAA 246 0.3862 MLFGVKHTQETCQIWWNMKANKIYDFAAEDAKVIALSPKTLMATNMYICEVCNKEFQREQNLQQHITGHNLPWKLRRHKRA 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03059 81 SMART c2h2final6 47 69 IPR013087 -
Trre13g03059 81 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 69 IPR013087 -
Trre13g03059 81 Gene3D Classic Zinc Finger 17 81 - -
Trre13g03059 81 Pfam Zinc-finger double-stranded RNA-binding 47 69 IPR022755 -
Trre13g03059 81 SUPERFAMILY beta-beta-alpha zinc fingers 43 69 IPR036236 -
Trre13g03059 81 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Trre13g03059 81 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 78 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03059 Trre-Chr13 36078517 36080162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03059 30 77 IDZ Gene Family AT5G66730 77.083 3.98e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g03059 zf-C2H2_jaz 4.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03059 K25870 - tcc:18609937 87.0409