Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03032 ATGATGTCCAGTGCATGTTGTACTGCACTAACCCATAACCACTTTCTGTTATCCCGCTCCGTCACCCTTTCCCCTCAACCAACTGCCCTTCAATTTCAATCACCATCTTCTCTCCTGCTCCCTCCTATCCACTCTCCTCCTCTCTTCAACCAATTGCGCTTCCGTCATTCTCGTCTCCATGCTTTATTCGATGACGGTTCCGGCGGTACTGGTGGAACCGGTGGTAATGGTGGATGGAATTCCGGTGACAATGAATCCGATGATGGAGGGGGAAAATGGTCCTTTTTGTCATGCATTGCAAAGAAGATAGAGCCTATGAATACGAATACTTTAGCATCATCTGTTTGGTGGGTGTTTGGATTTTATTTGATTGTTGTCGGTGGTCAACCACTTCTCGAAGGTTCTCGTTGTCTCTACTGGTTGACAGTGGTCTTTCCAGACTTTGACGTTTTTATTATGTTTTGCATCTGGATGGCATTTATAGTTTTCTTCGCTTTCTTCTGCATCATCCCAATAATAGCATTAGCTTATGCTTTAAGAATCAGGGAAGGTGCTTCAGAAGATGATATCAGGTCACTTCCTAGGTATAGGTTTAGTCGGTCAAATGTAATGGTTATGGTTGATGACAACCAGAAGCAATTTGTTGAACCAAGAACCGGTTCATACAATCAAAGCCATATCAGTGAACTATCTCTTTGTCCAGATGATTCTGAATGCTGTATCTGCCTATGTCCATATGTTGATGGAACAGAACTGTATCGGCTTCCCTGTACCCACCATTTTCATTGTGCATGCATCAGCCGTTGGCTTCGGATAAAAGCAACTTGCCCGCTCTGCAAATTTAATATCCGAAGAGGCGATACATTGGTTTAA 873 0.4353 MMSSACCTALTHNHFLLSRSVTLSPQPTALQFQSPSSLLLPPIHSPPLFNQLRFRHSRLHALFDDGSGGTGGTGGNGGWNSGDNESDDGGGKWSFLSCIAKKIEPMNTNTLASSVWWVFGFYLIVVGGQPLLEGSRCLYWLTVVFPDFDVFIMFCIWMAFIVFFAFFCIIPIIALAYALRIREGASEDDIRSLPRYRFSRSNVMVMVDDNQKQFVEPRTGSYNQSHISELSLCPDDSECCICLCPYVDGTELYRLPCTHHFHCACISRWLRIKATCPLCKFNIRRGDTLV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03032 290 SMART ring_2 239 279 IPR001841 -
Trre13g03032 290 MobiDBLite consensus disorder prediction 65 86 - -
Trre13g03032 290 Pfam Ring finger domain 238 280 IPR001841 -
Trre13g03032 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 287 IPR013083 -
Trre13g03032 290 PANTHER TARGET OF ERK KINASE MPK-1 107 284 - -
Trre13g03032 290 SUPERFAMILY RING/U-box 233 284 - -
Trre13g03032 290 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03032 Trre-Chr13 31342036 31346224 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03032 80 287 C3H Transcription Factor Family AT1G68070 45.714 3.58e-53 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03032 - - tpra:123888225 380.948