Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03029 ATGGAAGAACGACAAGACGAACAACAACAACAACGCCAGGTCATCACTCTCGGAACTAATAATCCCCTCCTCCACGGCCCCTTCGTGCCTCGATCGGACGATGAAGACGACGACGCCGGCTGCGCCTATTCCAGAGCGGTCCTCGTGGTTGACATGGTCTGGAACCTCTCCTTCGTCGTGGTTGCCGCTGCCGTCATCCTCTCCACATTCGGCGAGCATCCTTCCACTCCTCTCAGACTTTGGCTTTGTGGCTACGCCTTGGAGTGCATTCTCCATGTCGCTTTTGTTTACTCTGAATATCGTGTCACTACTCGTGATTACTTCTCTCATACCCCTTACAGCATTGCAAAGAAGTTAGAGCCTATGAATACTTTAGCATCATCTGTTTGGTGGGTGTTTGGATTTTATTGGGTTGTTGTCGGTGGTCAACCACTTCTCGAAGATTCTCCTCGTCTCTACTGGTTGACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATTATCTTTTGCATCGGGATGGCATGTATAGTTTTCTTCGCTCTCTTCTGCATCATCCCAATAATAGCATTAGCTTATGCTTTAAGAATCAGGGAAGGTGCTTCAGAAGATGATATCAAGTCACTTCCTGTGTATAGGTTTAGTCAGTCAAATGTAATGGTTATGGTTGATGACAACAAGAAGCAACTTGGTAAAGCAAGAACCGGTTCATACAATCAAAGCCATATCAGTGAACTATCTCTTCATCCAGATGATTCTGAATGCTGTATCTGCCTATGTCCATATGTTGATGGAACAGAACTGTATCGGCTCCCCTGTACCCACCATTTTCATAGTGCATGCATCAGCCGGTGGCTTCGGACAAAAGCAACTTGCCCGCTCTGCAAATTTAATATCCGAAGAGGCGACACATTGGTTTGA 918 0.4608 MEERQDEQQQQRQVITLGTNNPLLHGPFVPRSDDEDDDAGCAYSRAVLVVDMVWNLSFVVVAAAVILSTFGEHPSTPLRLWLCGYALECILHVAFVYSEYRVTTRDYFSHTPYSIAKKLEPMNTLASSVWWVFGFYWVVVGGQPLLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYALRIREGASEDDIKSLPVYRFSQSNVMVMVDDNKKQLGKARTGSYNQSHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHSACISRWLRTKATCPLCKFNIRRGDTLV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03029 305 SMART ring_2 254 294 IPR001841 -
Trre13g03029 305 PANTHER TARGET OF ERK KINASE MPK-1 35 299 - -
Trre13g03029 305 SUPERFAMILY RING/U-box 247 299 - -
Trre13g03029 305 Pfam Ring finger domain 253 295 IPR001841 -
Trre13g03029 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 302 IPR013083 -
Trre13g03029 305 ProSiteProfiles Zinc finger RING-type profile. 254 295 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03029 Trre-Chr13 31312759 31316444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03029 35 302 C3H Transcription Factor Family AT1G68070 44.483 1.17e-84 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03029 - - tpra:123888220 569.311