Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03018 ATGGAACATAATCTGGGTCAAGATTCTGTGCCTGTGGCTGATAAGTCTAGGGTTTTAAATGTGAAGCCATTGAGGACACTTGTTCCTGTGTTCCCTTCACCGGCCAATCCTTCCTCATCTTCAACTCCACAAGGTGGTGCTCCTTTTGTTTGTGTTTCTCCAGCAGGTCCGTTCCCCTCTGGTGTTGCACCATTTTACCCTTTCTTCGTTTCGCCAGAGTCTCAAAGGCTTTCTGAACAACATGCACCGAATGCAACTCCTCAACGTGCCACACCAATATCTACTGCTGTTCCAATTAATTCATTCAAGACTCCAACTGCAGCGACAAATGGAGATGTGGGTTCTTCACGGAAGACTAAGGGGAGTCGTGGTGGACAACTCACAGGGGAAGAAAGCTACAACGAAGTAATTGATTTAGAAGATGGAACTGGGGATGGGAGTTCAAAGCAGCGCAAGAAGAGGGGAAGGGCAAAGCGTGCTAGTGGTGCTGGTACCAATGGTAGTGGTGCGGTTGCTGTTGATGTTGATCTCGATGCCGTGGCTAATGATATTCTTCAATCAATTAACCCCATGGTTTTTGATGTTATAAATCATCCTGATGGTAGTAGGGATTCAGTTTCGTTTACACTTATGATATATGAAGTGTTGCGAAGAAAGCTTGGACAAATTGAAGAGTCAACAAAGGATGCTAATTCTGGAGCAAAGCGGCCTGATTTGAAGGCAGGAACGGTTATGATGACTAAAGGGGTTAGGAGTAACAGCAAGAAAAGGATTGGAATTGTGCCTGGTGTTGAGGTTGGAGATATTTTCTTTTTCCGGTTTGAGATGTGCTTAGTAGGACTACATTCACCTTCTATGGCTGGAATTGATTACCTGGGTTCCAAAGCAAGTCAAGAGGAAGAGCCATTGGCTGTTAGTATTGTCTCATCCGGAGGTTATGAAGATAATACCGACGATGGAGATGTGCTAATTTACAGTGGTCAAGGTGGAGTTAACCGCGACAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCTTTGGAGAAGAGCATGCATAGAGGTAATGATGTGAGAGTAATTAGGGGTTTGAAGGATGTAATGCATCCAACTGGGAAGGTATATGTCTATGACGGTATGTACAGGATTCAGGATTCATGGGTGGAGAAAGCAAAATCAGGTTTCAATGTATTTAAGTATAAACTAGTAAGGGTGCAGGGACAACCTGCAGCATATACAATATGGAAATCTGTTCAACAATGGACTGATAAGTCGGTTCCTAGAACAGGGGTTATATTGCCTGATCTTACTTCTGGGGGTGAAAAAGTACCTGTTTGTCTTGTGAATGATGTTGATAACGAGAAGGGCCCCGCATATTTCACTTACATCCCTACTCTCAAGAATCCGAGGCCAGTTGCTCCTTTGGAGCCTTCTGTTGGGTGTTCTTGTATCGGTGGTTGTCAACCTGGAAATTTTAATTGTCCCTGCATTCAAAAGAACGGAGGTTATCTCCCGTATTCTGCAGCTGGGTTAGTCGCAGACCTAAAGTCCGTGATACATGAATGTGGTCCTTCATGTCAGTGTCCCCCTACTTGCCGAAGCCGGGTTTCCCAAGGTGGCCTAAAATTCCGTTTGGAGGTGTTCAGAACCAACAATAAAGGATGGGGTCTAAGATCGTGGGATGCTATTCGTGCTGGAACTTTTATATGTGAGTATGCAGGAGAAGTCATAGATAATGCTAGAGCTGAAATGCTTGGTGGTGAAAATGATGATGAATACATTTTTGATTCTACTCGCATTTATCAGCAACTGGAAGTTTTTCCCGCTGACATTGAAGCTCCAAAGATCCCGTCTCCGCTGTATATAACAGCGAAAAATGAAGGAAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTGTTGTGGCGTCCTATTGGGATACTTTTGTTAATTGTACTTAAGCTCTAG 1977 0.4401 MEHNLGQDSVPVADKSRVLNVKPLRTLVPVFPSPANPSSSSTPQGGAPFVCVSPAGPFPSGVAPFYPFFVSPESQRLSEQHAPNATPQRATPISTAVPINSFKTPTAATNGDVGSSRKTKGSRGGQLTGEESYNEVIDLEDGTGDGSSKQRKKRGRAKRASGAGTNGSGAVAVDVDLDAVANDILQSINPMVFDVINHPDGSRDSVSFTLMIYEVLRRKLGQIEESTKDANSGAKRPDLKAGTVMMTKGVRSNSKKRIGIVPGVEVGDIFFFRFEMCLVGLHSPSMAGIDYLGSKASQEEEPLAVSIVSSGGYEDNTDDGDVLIYSGQGGVNRDKGASDQKLERGNLALEKSMHRGNDVRVIRGLKDVMHPTGKVYVYDGMYRIQDSWVEKAKSGFNVFKYKLVRVQGQPAAYTIWKSVQQWTDKSVPRTGVILPDLTSGGEKVPVCLVNDVDNEKGPAYFTYIPTLKNPRPVAPLEPSVGCSCIGGCQPGNFNCPCIQKNGGYLPYSAAGLVADLKSVIHECGPSCQCPPTCRSRVSQGGLKFRLEVFRTNNKGWGLRSWDAIRAGTFICEYAGEVIDNARAEMLGGENDDEYIFDSTRIYQQLEVFPADIEAPKIPSPLYITAKNEGNVARFMNHSCSPNVLWRPIGILLLIVLKL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03018 658 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 121 647 - -
Trre13g03018 658 SMART preset_2 434 528 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g03018 658 MobiDBLite consensus disorder prediction 77 167 - -
Trre13g03018 658 ProSiteProfiles YDG domain profile. 259 405 IPR003105 -
Trre13g03018 658 ProSiteProfiles SET domain profile. 544 658 IPR001214 GO:0005515
Trre13g03018 658 Pfam SAD/SRA domain 258 409 IPR003105 -
Trre13g03018 658 Gene3D SET domain 414 650 IPR046341 -
Trre13g03018 658 Gene3D - 257 413 IPR036987 -
Trre13g03018 658 SMART G9a_1 254 409 IPR003105 -
Trre13g03018 658 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 242 424 - -
Trre13g03018 658 Pfam Pre-SET motif 439 536 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g03018 658 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 19 648 IPR025794 GO:0016571
Trre13g03018 658 ProSiteProfiles Pre-SET domain profile. 480 541 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g03018 658 SUPERFAMILY PUA domain-like 241 423 IPR015947 -
Trre13g03018 658 Pfam SET domain 555 646 IPR001214 GO:0005515
Trre13g03018 658 MobiDBLite consensus disorder prediction 77 129 - -
Trre13g03018 658 SMART set_7 544 657 IPR001214 GO:0005515
Trre13g03018 658 SUPERFAMILY SET domain 420 647 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03018 Trre-Chr13 31028982 31032679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03018 14 648 Su(var)3-9 homologs AT1G73100 47.840 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre13g03018 SAD_SRA 4.9e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03018 K24405 - gmx:100805932 1022.31