Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03010 ATGGTGAAAAAGAGAAAACTCGTCGCAAAATCTTCTCAACCAGAGGAACCTCCACTTAAGCAACATCAACCGGACCCCGAACCTGAACCGGAGCCATACATCCCTACCGACGAATATGAAGAAGTTGAAGAAGAAGTTGAATACGAAGAAGTAGAGGAAGAAGAAGAAGTAGAGGAAGAGGAAGAAGACGAAGAAGAAGAAGAAGAAACTCAAGGTGGTGGAGAGTATCAAGACGAAGACGATGAACCGATTCAGAAGCTTGTAGAACCTTTCACAAAAGAACAGATCGTGAGTCTTCTTTGTGAAGCTGCATCTAAGCATCGTGATGTTGCTGATCGGATCAGGAAAATTGCTGACGGAGATGCGTCGCATCGGAAAATCTTTGTTCATGGTTTGGGATGGGATACGACTTCAGCAACCCTAATTAACGCGTTCTCGCAGTACGGTGAAATTGAGGATTGTAAAGCGGTTACTGATAAGGTTTCTGGTAAATCCAAGGGTTATGGATTTATCCTCTTTAAGAGGAGAAGCGGTGCGCGGAATGCGTTGAAGGAGCCCCAGAAGAAGATTGGGAATAGAATGACGGCTTGCCAGCTGGCTTCTATTGGACCTGTGCAGCAAACTCCGCAGCCTGTGCCGCAGTTGGTTCCCCAAGGCTCGGAGTATACGCAGAGGAAGATTTATATTAGCAATGTTGGTCCTGATTTGGAGGCGCAGAAACTGTTTGCTTATTTTTCGAGGTTTGGAGAGATTGAGGAAGGGCCTTTAGGGCTTGATAAGGTGACTGGAAAGCCGAAAGGGTTTTGTTTGTTTGTTTATAAGAGCGCTGAGAGTGCGAGGAGGGCGTTGGAAGAGCCTCATAAGGAATTTGAGGGACATATTTTGCATTGTCAGAGGGCAATTGATGGTCCTAAGGTTGTGAAGACACAGCAACAACATCAACAGCCGCTGCCGCAGCAACATGTGAATCCATTGAATCAATTGAATCCATTGACTCAGAGGACACAATATCAGAGAAATGACAATGTTGGATTTGTTGGTGGTAGTAGTGTTGCAGTTAGCCAGCCAGGAGGGCACTTAATGGCGCCAACAGGACCTGCAGCCGGGTACAATCAGGCTGCTGCTTCGGCTGTGCAGGGGCTGAACCCGGTGCTGACACCTGCTCTTGGACAGGCGTTGACGGCACTGCTTGCGTCTCAGGGTGCTTCTTTGGGGCTGTCTAATTTGTTAGGGAGTCTTGGAACGAGTAGTGCGCTTAATCCTGGTGTTCCTGCTGCGGCACATGCAGTTCAGAATGGATACAGTGCTCAGCCTGCTATAAGTCCATCACTTATGGGAGCATATGGGAATACAGTGCCACAGACTGGGTTGCTGCAATACCCAAACCAGCAGATTGGACAAGTTGGGTGGCAGATTCTACATAAGTGCATCAGTCTTTTATTACTGGCCTGTTTAGTGGCTGGTTATCCTCAAATAAATAGGTGGCTTTTGCGGACTGGAAGGATGGTGTAG 1512 0.4749 MVKKRKLVAKSSQPEEPPLKQHQPDPEPEPEPYIPTDEYEEVEEEVEYEEVEEEEEVEEEEEDEEEEEETQGGGEYQDEDDEPIQKLVEPFTKEQIVSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPQPVPQLVPQGSEYTQRKIYISNVGPDLEAQKLFAYFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQRAIDGPKVVKTQQQHQQPLPQQHVNPLNQLNPLTQRTQYQRNDNVGFVGGSSVAVSQPGGHLMAPTGPAAGYNQAAASAVQGLNPVLTPALGQALTALLASQGASLGLSNLLGSLGTSSALNPGVPAAAHAVQNGYSAQPAISPSLMGAYGNTVPQTGLLQYPNQQIGQVGWQILHKCISLLLLACLVAGYPQINRWLLRTGRMV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03010 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 314 IPR000504 GO:0003723
Trre13g03010 503 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 32 302 - -
Trre13g03010 503 MobiDBLite consensus disorder prediction 31 78 - -
Trre13g03010 503 Gene3D - 207 319 IPR012677 -
Trre13g03010 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 193 IPR000504 GO:0003723
Trre13g03010 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 295 IPR000504 GO:0003723
Trre13g03010 503 SMART rrm1_1 226 298 IPR000504 GO:0003723
Trre13g03010 503 SMART rrm1_1 126 198 IPR000504 GO:0003723
Trre13g03010 503 SUPERFAMILY RNA-binding domain, RBD 123 207 IPR035979 GO:0003676
Trre13g03010 503 SUPERFAMILY RNA-binding domain, RBD 206 316 IPR035979 GO:0003676
Trre13g03010 503 MobiDBLite consensus disorder prediction 1 80 - -
Trre13g03010 503 Coils Coil 39 71 - -
Trre13g03010 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 234 IPR000504 GO:0003723
Trre13g03010 503 Gene3D - 36 206 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03010 Trre-Chr13 30906016 30911006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03010 224 317 C2H2 Transcription Factor Family AT2G19380 32.979 1.57e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03010 K12741 - gmx:100784200 483.796