Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03009 ATGGTGAAAAAGAGAAAACTCGTCGCAAAATCTTCTCAACCAGAGGAACCTCCACTTAAGCAACATCAACCGGACCCCGAACCTGAACCGGAGCCATACATCCCTACCGACGAATATGAAGAAGTTGAAGAAGAAGTTGAATACGAAGAAGTAGAGGAAGAAGAAGAAGTAGAGGAAGAGGAAGAAGACGAAGAAGAAGAAGAAGAAACTCAAGGTGGTGGAGAGTATCAAGACGAAGACGATGAACCGATTCAGAAGCTTGTAGAACCTTTCACAAAAGAACAGATCGTGAGTCTTCTTTGTGAAGCTGCATCTAAGCATCGTGATGTTGCTGATCGGATCAGGAAAATTGCTGACGGAGATGCGTCGCATCGGAAAATCTTTGTTCATGGTTTGGGATGGGATACGACTTCAGCAACCCTAATTAACGCGTTCTCGCAGTACGGTGAAATTGAGGATTGTAAAGCGGTTACTGATAAGGTTTCTGGTAAATCCAAGGGTTATGGATTTATCCTCTTTAAGAGGAGAAGCGGTGCGCGGAATGCGTTGAAGGAGCCCCAGAAGAAGATTGGGAATAGAATGACGGCTTGCCAGCTGGCTTCTATTGGACCTGTGCAGCAAACTCCGCAGCCTGTGCCGCAGTTGGTTCCCCAAGGCTCGGAGTATACGCAGAGGAAGATTTATATTAGCAATGTTGGTCCTGATTTGGAGGCGCAGAAACTGTTTGCTTATTTTTCGAGGTTTGGAGAGATTGAGGAAGGGCCTTTAGGGCTTGATAAGGTGACTGGAAAGCCGAAAGGGTTTTGTTTGTTTGTTTATAAGAGCGCTGAGAGTGCGAGGAGGGCGTTGGAAGAGCCTCATAAGGAATTTGAGGGACATATTTTGCATTGTCAGAGGGCAATTGATGGTCCTAAGGTTGTGAAGACACAGCAACAACATCAACAGCCGCTGCCGCAGCAACATGTGAATCCATTGAATCAATTGAATCCATTGACTCAGAGGACACAATATCAGAGAAATGACAATGTTGGATTTGTTGGTGGTAGTAGTGTTGCAGTTAGCCAGCCAGGAGGGCACTTAATGGCGCCAACAGGACCTGCAGCCGGGTACAATCAGGCTGCTGCTTCGGCTGTGCAGGGGCTGAACCCGGTGCTGACACCTGCTCTTGGACAGGCGTTGACGGCACTGCTTGCGTCTCAGGGTGCTTCTTTGGGGCTGTCTAATTTGTTAGGGAGTCTTGGAACGAGTAGTGCGCTTAATCCTGGTGTTCCTGCTGCGGCACATGCAGTTCAGAATGGATACAGTGCTCAGCCTGCTATAAGTCCATCACTTATGGGAGCATATGGGAATACAGTGCCACAGACTGGGTTGCTGCAATACCCAAACCAGCAGATTGGACAAGTTGGGTGGCAGATTCTACATAAGTGCATCAGTCTTTTATTACTGGCCTGTTTAGTGGCTGGTTATCCTCAAATAAATAGGTGGCTTTTGCGGACTGGAAGATACAAATGGTGGAGACTCTTTATATATAGAGTTCTCTATCTTATGCTAGCTGGCATTGCCACTATTACAAAGTTTAACCGACTTTAG 1590 0.4679 MVKKRKLVAKSSQPEEPPLKQHQPDPEPEPEPYIPTDEYEEVEEEVEYEEVEEEEEVEEEEEDEEEEEETQGGGEYQDEDDEPIQKLVEPFTKEQIVSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPQPVPQLVPQGSEYTQRKIYISNVGPDLEAQKLFAYFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQRAIDGPKVVKTQQQHQQPLPQQHVNPLNQLNPLTQRTQYQRNDNVGFVGGSSVAVSQPGGHLMAPTGPAAGYNQAAASAVQGLNPVLTPALGQALTALLASQGASLGLSNLLGSLGTSSALNPGVPAAAHAVQNGYSAQPAISPSLMGAYGNTVPQTGLLQYPNQQIGQVGWQILHKCISLLLLACLVAGYPQINRWLLRTGRYKWWRLFIYRVLYLMLAGIATITKFNRL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03009 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 314 IPR000504 GO:0003723
Trre13g03009 529 MobiDBLite consensus disorder prediction 31 78 - -
Trre13g03009 529 SMART rrm1_1 226 298 IPR000504 GO:0003723
Trre13g03009 529 SMART rrm1_1 126 198 IPR000504 GO:0003723
Trre13g03009 529 Gene3D - 207 319 IPR012677 -
Trre13g03009 529 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 32 302 - -
Trre13g03009 529 MobiDBLite consensus disorder prediction 1 80 - -
Trre13g03009 529 SUPERFAMILY RNA-binding domain, RBD 206 316 IPR035979 GO:0003676
Trre13g03009 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 193 IPR000504 GO:0003723
Trre13g03009 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 295 IPR000504 GO:0003723
Trre13g03009 529 Coils Coil 39 71 - -
Trre13g03009 529 Gene3D - 36 206 IPR012677 -
Trre13g03009 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 234 IPR000504 GO:0003723
Trre13g03009 529 SUPERFAMILY RNA-binding domain, RBD 123 207 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03009 Trre-Chr13 30903643 30911006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03009 221 317 C2H2 Transcription Factor Family AT2G19380 31.959 1.85e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03009 K12741 - gmx:100784200 483.796