Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03008 ATGGGATCTCATGGTGGAGCAACAATTCAAGAGCCAAAGACTGGAACTTTGGCTAAGGAAGGATCTTTGTATAATCTCACACTTGATGAGGTTCAAAATCAGCTTGGTAATTTAGGGAAACCCTTAGGAAGTATGAATCTAGATGAGCTACTCAAGAGTTTATGGACATCTGAAGCTGCTCAAGCTTCTGGATTGGATTCTAGTGCTACTGATGGTTACATGCAGAATGGTCAACTAGCTTCTGGATCATCTATGAATCCATTAACACCTTCTGGTGACCTTAGTAAGAAAACTATTGATGAGGTTTGGAGGGATATGCAACAGAAGAAGAGTAGTAGTCAGGAGAGGAGAACAGCTACACTAGGTGAAATGACTTTGGAAGATTTCTTGATGAAAGCTGGTGTGGCTACTGAATCTTTTCCTTCTGAAGATAATGCTATGTCAGGAAGGGTTGATTCTCAGGAACAGCATAATACATCTCAGCATGGTCATTGGATGCAGTACCAAATCCCTTCAGCTCAGCAACAACAACAACAACAGCATCAACATCAAAATAATCAGAATAATATGATGACTGGTTTTGCAGGTTATATGGCTGGTCATGTGGTTCAACAGCCTGTTTTGGATGCAGGATACACTGAAGCAATGTTGAGTCTGTCACCGTCTTCTTTAATGGCTACTTCGTCGGATACGCAGACTCAAAGTAGGAAAAGGGTTGCCTCTGGTGTTGTGGTTGAGAAAACTGTTGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCAGCCCGGTCGCGGGCTAGAAAACAGGCTTACACACATGAACTGGAGATCAAAGTTTCACATTTGGAAGAAGAGAATGAAAGGCTTAAACGACTACATGAGATAGAGAGAGTGTTGCCAAGTATTCCACCACCAGACCCTAAGCATCAGCTTCGCAGGACTAGCTCAGCTCCCCTTTGA 966 0.4275 MGSHGGATIQEPKTGTLAKEGSLYNLTLDEVQNQLGNLGKPLGSMNLDELLKSLWTSEAAQASGLDSSATDGYMQNGQLASGSSMNPLTPSGDLSKKTIDEVWRDMQQKKSSSQERRTATLGEMTLEDFLMKAGVATESFPSEDNAMSGRVDSQEQHNTSQHGHWMQYQIPSAQQQQQQQHQHQNNQNNMMTGFAGYMAGHVVQQPVLDAGYTEAMLSLSPSSLMATSSDTQTQSRKRVASGVVVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSHLEEENERLKRLHEIERVLPSIPPPDPKHQLRRTSSAPL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03008 321 Coils Coil 274 294 - -
Trre13g03008 321 MobiDBLite consensus disorder prediction 170 189 - -
Trre13g03008 321 MobiDBLite consensus disorder prediction 140 163 - -
Trre13g03008 321 Gene3D - 249 300 - -
Trre13g03008 321 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 18 320 IPR043452 GO:0003700|GO:0045893
Trre13g03008 321 MobiDBLite consensus disorder prediction 141 163 - -
Trre13g03008 321 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 249 301 - -
Trre13g03008 321 SUPERFAMILY Leucine zipper domain 251 295 IPR046347 GO:0003700|GO:0006355
Trre13g03008 321 MobiDBLite consensus disorder prediction 64 93 - -
Trre13g03008 321 SMART brlzneu 247 315 IPR004827 GO:0003700|GO:0006355
Trre13g03008 321 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700|GO:0006355
Trre13g03008 321 CDD bZIP_plant_BZIP46 251 296 - -
Trre13g03008 321 MobiDBLite consensus disorder prediction 299 321 - -
Trre13g03008 321 MobiDBLite consensus disorder prediction 64 95 - -
Trre13g03008 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 293 IPR004827 GO:0003700|GO:0006355
Trre13g03008 321 Pfam bZIP transcription factor 251 293 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03008 Trre-Chr13 30888029 30891039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03008 7 321 bZIP Transcription Factor Family AT3G56850 54.740 5.08e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g03008 bZIP_1 1.2e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03008 K14432 - gmx:100783666 405.601