Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03007 ATGTATCATGCAAAGAAGTTTCCGGAGGCAACGATGATGCCTCATAAATCACAAGGTGGGGCTGAACAGCTTGCAAATGTTGGGGTTTTGAGTGGATCTGCTGTGAAAAATGTTGCACCTGCACCTGCACCTTCTGGGGGTGGTGGGAAACAGCGTTTGCGTTGGACGTCTGATCTTCATGATCGTTTTGTGGATGCTATTACACAGCTTGGTGGACCAGATAGAGCAACACCGAAAGGTGTTCTGAGAGTGATGGGCGTACCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAGTATCGCCTGGCGAAGTACTTGCCTGAATCACCAGCTGATGGTAAAGATTCTAAAGATGAGAAAAGGAATTCTGGAGACAGTATTTCTGGCGCTGATTCTTCCCCGGGATTGCAAATCAATGACGCACTAAGAATGCAAATGGAGGTTCAGAAACGTCTGCATGAACAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCTCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGGCAGCCTCAGAAACGCTTCCATTGCCCCATGATAAGCACAATCATACCCAGTCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGCACTTTTTCTCCACTTAAGAAACAGAGAATTGATGAAGGTCCGAAGGATGGGTTCACTGTGTCCCAAGTTACAATAAAGAGTGCAGAGAAGAATGATTGTAATGTTGGTCGTTTAGATCCAAACTTGTATGAAGACGATGCTGGCTTTGGATTTGATTTAGAGACAGAAAACGATGACAACAATGAGAGTGAGTAG 849 0.4441 MYHAKKFPEATMMPHKSQGGAEQLANVGVLSGSAVKNVAPAPAPSGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETLPLPHDKHNHTQSEPSGSSDALAGTFSPLKKQRIDEGPKDGFTVSQVTIKSAEKNDCNVGRLDPNLYEDDAGFGFDLETENDDNNESE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03007 282 Pfam MYB-CC type transfactor, LHEQLE motif 138 184 IPR025756 -
Trre13g03007 282 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Trre13g03007 282 Coils Coil 141 161 - -
Trre13g03007 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 107 IPR017930 -
Trre13g03007 282 MobiDBLite consensus disorder prediction 110 127 - -
Trre13g03007 282 Gene3D - 49 108 - -
Trre13g03007 282 MobiDBLite consensus disorder prediction 109 139 - -
Trre13g03007 282 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677
Trre13g03007 282 Pfam Myb-like DNA-binding domain 53 103 IPR001005 -
Trre13g03007 282 MobiDBLite consensus disorder prediction 195 236 - -
Trre13g03007 282 FunFam Myb family transcription factor 49 107 - -
Trre13g03007 282 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 49 221 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03007 Trre-Chr13 30881350 30885724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03007 34 200 G2-like Transcription Factor Family AT3G13040 51.462 1.18e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre13g03007 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03007 - - tpra:123889278 532.332