Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02962 ATGGAAGAGATGATTACTCTGTTAGGAGCTCACACTGTTGGATTCACACATTGCAGCTTCATTGAAAGAAGGGTTAAAAATGAAAGTTTTCCGATGGATAGTGCCTTGAGAAAGAAGTTAGTGGGATTTTGTGCCGTTGAAGGGGATGATCCGGCTGTTTTTTTGGATCAAAAGACATCGTTTGTGTTTGACAACGAATTTTATAATCATGTTTTGTTGAAACGAGGACTGTTGACAATCGATCAAAACTTGGCTCTTGATTCTATTTCAAAAGGGGTTGTGACAAGTTTGGCTGCAAATGGAGAAAACTTTAGGGAGAAGTTTGTTGGTGCGATTGTGAAGATGGGGAAAATAGATGTGTTGGTTGGAAATGATGGAGAAATCAGGAAAAATTGCAGAGTGTTTAATATACTAGGAAAAAGAGATGTGCATTCTTACACACTATCTCCCCCACTTAACTTTTCACATTCTCTTCTCTCTCCACCCTATGCACTCTTCATCTTCTTCAATCTTCTACAACTTCTTTCTTCCTTGCTTCATATTAATATATTTTGA 555 0.3766 MEEMITLLGAHTVGFTHCSFIERRVKNESFPMDSALRKKLVGFCAVEGDDPAVFLDQKTSFVFDNEFYNHVLLKRGLLTIDQNLALDSISKGVVTSLAANGENFREKFVGAIVKMGKIDVLVGNDGEIRKNCRVFNILGKRDVHSYTLSPPLNFSHSLLSPPYALFIFFNLLQLLSSLLHINIF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02962 184 SUPERFAMILY Heme-dependent peroxidases 2 136 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre13g02962 184 Gene3D Peroxidase, domain 2 2 116 - -
Trre13g02962 184 Pfam Peroxidase 2 99 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02962 184 Gene3D - 117 133 - -
Trre13g02962 184 ProSiteProfiles Plant heme peroxidase family profile. 1 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02962 184 PANTHER - 2 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02962 184 ProSitePatterns Peroxidases proximal heme-ligand signature. 3 13 IPR019793 -
Trre13g02962 184 PRINTS Plant peroxidase signature 110 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02962 184 PRINTS Plant peroxidase signature 54 69 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02962 184 PRINTS Plant peroxidase signature 2 14 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02962 184 PRINTS Plant peroxidase signature 70 87 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02962 184 PRINTS Haem peroxidase superfamily signature 56 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02962 184 PRINTS Haem peroxidase superfamily signature 3 18 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02962 Trre-Chr13 29833709 29834263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02962 3 136 Peroxidase AT4G26010 46.667 2.81e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02962 K00430 - rcu:8286481 159.073