Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02937 ATGGCTTCAAGTACCACAACAGATTCAACCACAACATTGGTTGATCAAGTTCCCTCAACTGACCAGTCCAGTGTTGGTGATGATTTCTTAAACAATCAGAGCAGCACAAAAGTTCATTTATATGAGAATCAATATTTTCTCGGCTCATCGTATAATTGGGATTTGTACAAAGACCTCGGTGCAAACAACCTAATTCCAATGGAAATTGCACTAAAATTAGCCGACAAAATAAAACAGAAAGAGAGATTCTCTGTGTATATTGTCATTCCTATGTGGCCTGAAGGCGTTCTTTCAAGTACAGCTACGCAGCGGATTCTCTTTTGCCAGTTCAAAACAATGCAAATGATGTACAAAACAATTTACAAAGCTTTAGTAGAGGTTGGACTTGAAAATGAGTATGAACCACAAGGCTACTTGAACTTTTTTCGCCTTGGCAATCGCGAGCTCTCCGATAATGAAAACACTTCAAAAACTGTAAAACTTACAGGACAAAACACTCCTCAGGTACTCACTCAAAAGAACAGAAGATTCATGATTGATGTTCATCTAAAAGGAATGATAGTGGATGATGAATATGTGTTAATGGGATCTGCCAACAAAAATCAGAGATCCATGGAAGGCACTAGATACACTGAGATTGCAATGGGAGCATATCAGCCTAATCATGTGGAGGAGTGTTTGAGAGTTGTTAGTGGATCTTCTAAGCATCATATGAGAAATAGTTTTATCCATGTTGTACAGTTATTTCTCACTTGGTAA 759 0.3794 MASSTTTDSTTTLVDQVPSTDQSSVGDDFLNNQSSTKVHLYENQYFLGSSYNWDLYKDLGANNLIPMEIALKLADKIKQKERFSVYIVIPMWPEGVLSSTATQRILFCQFKTMQMMYKTIYKALVEVGLENEYEPQGYLNFFRLGNRELSDNENTSKTVKLTGQNTPQVLTQKNRRFMIDVHLKGMIVDDEYVLMGSANKNQRSMEGTRYTEIAMGAYQPNHVEECLRVVSGSSKHHMRNSFIHVVQLFLTW 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02937 252 PANTHER PHOSPHOLIPASE D 19 231 IPR015679 -
Trre13g02937 252 SUPERFAMILY Phospholipase D/nuclease 42 225 - -
Trre13g02937 252 MobiDBLite consensus disorder prediction 1 28 - -
Trre13g02937 252 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 182 204 IPR001736 GO:0003824
Trre13g02937 252 SMART pld_4 177 204 IPR001736 GO:0003824
Trre13g02937 252 Gene3D Endonuclease Chain A 7 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02937 Trre-Chr13 29585151 29587572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02937 42 222 Phospholipase D Gene Family (Wang group) AT4G00240 72.376 1.77e-90 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02937 K01115 - gmx:100786241 306.605