Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02922 ATGGGAAGACCTCCTTGTTGTGACAAAGTTGGTGTCAAGAAAGGTCCTTGGACACCTGAAGAAGATATCATCCTTGTTTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTTCCTACTAATACAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTATCTAAGGCCAGGAATCAAAAGAGGAAACTTTACTCCTCATGAAGAAGGAATGATTATTCATTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACAGATAATGATATAAAAAATTATTGGAACACACATCTAAAGAAAAAGCTCAACAAATTTCAAGCAGCTTTAGATCAACCATCAAACTCAACTACAACTTATCTATCCAAGAGTTTTAGTGATAGAAGTTTAGATATAAGCAATAATCATGCTTCATCTCTTAAGCTTAATACTACTACTACTACTCAAAGTTCTCATCAATCTTCTTCTTCAACATATGCTTCAAGCACTGAAAATATTTCAAGACTTTTAGAAGGTTGGATGAGATCTTCTCCAAATTCACATATCAAAGGAAATTACCAATATGGTCATCAAGAATTTCAAATCATTAATGAAGATATTATGGATGATGATAATAATGACTTTGAAAATAATGGTAAGTTATTAGTGAAATCTTCTTCACTTCCAGCTGATTTAAACCTTGAAATCCATCATCATCATAAAAAAATACAAGAAGGTGGAGTTTCACATGATCAAGAGTTTGATTCTATTCTTTCATTTGAGAATCTTAATAACAATGGTGTTTCTTGGGATAAGTCAACTTGTGATTCTATGCCTCATGAAAAGTGTTCTACTTCTTCTTCTGATCACAAGAATAATATTAAGAATTTATGTGGAGCTCCTCCTCCATTGTCATTTCTTGAGAAGTGGTTATTGGATGAAAATGTTGGACATGTAGAGGAAATGATGGAATTATCACCAATGTTCTAA 1008 0.3393 MGRPPCCDKVGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLNKFQAALDQPSNSTTTYLSKSFSDRSLDISNNHASSLKLNTTTTTQSSHQSSSSTYASSTENISRLLEGWMRSSPNSHIKGNYQYGHQEFQIINEDIMDDDNNDFENNGKLLVKSSSLPADLNLEIHHHHKKIQEGGVSHDQEFDSILSFENLNNNGVSWDKSTCDSMPHEKCSTSSSDHKNNIKNLCGAPPPLSFLEKWLLDENVGHVEEMMELSPMF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02922 335 CDD SANT 69 112 IPR001005 -
Trre13g02922 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre13g02922 335 CDD SANT 16 61 IPR001005 -
Trre13g02922 335 Gene3D - 13 66 - -
Trre13g02922 335 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre13g02922 335 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre13g02922 335 Gene3D - 69 171 - -
Trre13g02922 335 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre13g02922 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 225 - -
Trre13g02922 335 SMART sant 66 114 IPR001005 -
Trre13g02922 335 SMART sant 13 63 IPR001005 -
Trre13g02922 335 FunFam MYB-related transcription factor 13 66 - -
Trre13g02922 335 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre13g02922 335 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre13g02922 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02922 Trre-Chr13 29168981 29170528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02922 1 119 MYB Transcription Factor Family AT5G62470 89.916 4.94e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g02922 Myb_DNA-binding 1.7e-15 CL0123