Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02919 ATGGATTTTTTACAAACACCAGAAAATCAGATACTTGTTGGTGTCGTTGTGGCTGTTGTAGCCATTGGTGTTGGTGCTGTCTATCTCTTTTCTTCTAAGAAGTCCAAAGCTTGCTTGAACCCAGAGCAGTTCAGGGAGTTTAAACTTGTCAAGAAAGCACAGCTGAGCCATAATGTTGCAAAATTCACTTTTGAACTCCCAACACCTACTTCTGTTTTGGGTCTTCCAATTGGACAACACATAAGTTGCAGGGGTAAGGATGGTCAAGGCGAAGAGGTTATCAAACCATATACTCCTACAACTTTGGATTCTGATGTCGGACATTTTGAACTAGTTATCAAGATGTACCCTCAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGAGACTCTCTTGCTGTGAAAGGACCAAAGGGACGTTTCAAGTACCAACCGGGTGAGGTTAGAGCATTTGGGATGCTTGCCGGAGGGTCTGGAATCACTCCAATGTTCCAAGTAGCTAGAGCTATATTAGAAAACCCAAACGACAAGACCAAGGTTCATCTTATCTATGCCAATGTTACATATGAGGACATTCTTTTGAAGGAAGAACTTGATGGCCTTGCTACTAACTATCCGGACCGATTCAAAATATACTATGTGTTAAATCAGCCTCCTGAGATATGGGATGGCGGCGTCGGATTTGTATCAAAGGAGATGATTCAAGCACATTTGCCTCCTCCAGCACAAGATATTAAGATTCTGAGATGCGGGCCGCCACCAATGAACAAGGCAATGGCTGCTCACCTTGAAGCCCTTGAATATGCTCCCGAGATGCAGTTCCAGTTTTGA 837 0.4385 MDFLQTPENQILVGVVVAVVAIGVGAVYLFSSKKSKACLNPEQFREFKLVKKAQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDSLAVKGPKGRFKYQPGEVRAFGMLAGGSGITPMFQVARAILENPNDKTKVHLIYANVTYEDILLKEELDGLATNYPDRFKIYYVLNQPPEIWDGGVGFVSKEMIQAHLPPPAQDIKILRCGPPPMNKAMAAHLEALEYAPEMQFQF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02919 278 Gene3D - 136 278 IPR039261 -
Trre13g02919 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491
Trre13g02919 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491
Trre13g02919 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491
Trre13g02919 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Trre13g02919 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
Trre13g02919 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Trre13g02919 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Trre13g02919 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Trre13g02919 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Trre13g02919 278 FunFam NADH-cytochrome b5 reductase 37 136 - -
Trre13g02919 278 CDD cyt_b5_reduct_like 47 278 - -
Trre13g02919 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
Trre13g02919 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 274 IPR039261 -
Trre13g02919 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 33 278 IPR001834 GO:0016491
Trre13g02919 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491
Trre13g02919 278 FunFam NADH-cytochrome b5 reductase 136 278 - -
Trre13g02919 278 Gene3D Translation factors 36 135 - -
Trre13g02919 278 SUPERFAMILY Riboflavin synthase domain-like 38 147 IPR017938 -
Trre13g02919 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02919 Trre-Chr13 29081648 29085450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02919 2 278 NADPH P450 reductases AT5G17770 84.173 8.95e-170 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02919 K00326 - gmx:100816447 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02919 13 29081648 29085450 Trre13g02919 13 29081648 29085450 ECH