Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02913 ATGAGTTCACAAAACTTCAACAATGGTGATATGGCTCTTTTCCCTTTATCTCCTATTCCTCCTTCTTTGACAAATCCTGAAATGGGTCTTCAGATTTTGAGACCTTCTTTGTTTCAGTCCAAAGAGATTAGAGAAACAAAGGAAGAAGATGTGTACTTTGGGATTCAGAGCAAAAACTTGTCTTTGAAACTTGGTGATGAAGTAGAAGAAGAAAAAAGCTCTGTTCCTGTGAAGATTGGTTACTCCAAACTTTGTTCTAGAGGTCATTGGAGACCAGCTGAAGATGCTAAACTTAAGGAACTTGTTGCTGAATTTGGTCCTCAAAATTGGAACTTGATTGCAGAACATCTTGATGGAAGATCAGGAAAAAGTTGCAGATTAAGGTGGTTTAATCAACTAGACCCAAGGATTAACAAAAGAACATTTTCAGAGGAGGAAGAGGAGAGACTTTTAGCTGCTCATAAAATGTATGGTAACAAATGGGCTATGATTGCTAGACTTTTTCCAGGAAGAACAGATAATGCAGTGAAGAATCATTGGCATGTAATCATGGCTAGGAGGCATAGGGAACAGTGTAGTGTGTATAGAAGGAGAAAGCCAATTGTTGAAAGCATTTCAAAGGGTTTGAAATTGAGTCTTTCAAATAATGCAGTTAGTGATTCAACTATCTCAAGCAACATTGATGGAAATGTATCAGCTTGTACTAATCTCTCCCTCACTCCTTCTTCAGTTAATCTAAATCCTCAACTGTTTCATAAATTTGTGGCTCCAGTTCAAAATTACCAAGGTTTTGGATCAGTAATTATTGGTAAGTCTAGAGAAAGTGTGGTTGCAACCAGGGATGTGAGTATTGACAAATATTTTGGAGCTAGTAAGAAGCAAGAACAAGTGGAAAAGCTAAAGGTAATAGATGTGGTCCAGTCCAATTTTTCAGATTCAAACTCAGAAGTATCAGCATCTGAGTCAGTTACAACCAATAGGTCCAATATCTCAATTTCTGGTGAAAGTGAAAATGTTGGTATTAAGATTAACATGTTACCATTCATTGATTTTCTTGGAGTAGGAGCTACACATAGCTAA 1080 0.3694 MSSQNFNNGDMALFPLSPIPPSLTNPEMGLQILRPSLFQSKEIRETKEEDVYFGIQSKNLSLKLGDEVEEEKSSVPVKIGYSKLCSRGHWRPAEDAKLKELVAEFGPQNWNLIAEHLDGRSGKSCRLRWFNQLDPRINKRTFSEEEEERLLAAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRHREQCSVYRRRKPIVESISKGLKLSLSNNAVSDSTISSNIDGNVSACTNLSLTPSSVNLNPQLFHKFVAPVQNYQGFGSVIIGKSRESVVATRDVSIDKYFGASKKQEQVEKLKVIDVVQSNFSDSNSEVSASESVTTNRSNISISGESENVGIKINMLPFIDFLGVGATHS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02913 359 CDD SANT 150 181 IPR001005 -
Trre13g02913 359 Gene3D - 140 199 - -
Trre13g02913 359 SMART sant 138 186 IPR001005 -
Trre13g02913 359 SMART sant 86 135 IPR001005 -
Trre13g02913 359 Gene3D - 87 138 - -
Trre13g02913 359 ProSiteProfiles Myb-like domain profile. 87 133 IPR001005 -
Trre13g02913 359 Pfam Myb-like DNA-binding domain 87 133 IPR001005 -
Trre13g02913 359 Pfam Myb-like DNA-binding domain 140 182 IPR001005 -
Trre13g02913 359 SUPERFAMILY Homeodomain-like 87 180 IPR009057 -
Trre13g02913 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 133 IPR017930 -
Trre13g02913 359 ProSiteProfiles Myb-like domain profile. 134 184 IPR001005 -
Trre13g02913 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 188 IPR017930 -
Trre13g02913 359 PANTHER MYB PROTEIN-RELATED 87 307 - -
Trre13g02913 359 FunFam MYB transcription factor 140 209 - -
Trre13g02913 359 FunFam MYB transcription factor 87 138 - -
Trre13g02913 359 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02913 Trre-Chr13 28956629 28958344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02913 82 251 MYB Transcription Factor Family AT5G17800 60.452 4.20e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g02913 Myb_DNA-binding 9.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02913 K09422 - gmx:100791795 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02913 13 28956629 28958344 Trre13g02913 13 28956629 28958344 ECH