Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02912 ATGGAAGATAAGATGCAACAACATGACCCCCCCAACAACACTCCAACCCAACATGGTTCCGAGAAAACTGAACCGGTTAGGTCAAGATGGACACCAAAACCAGAACAAATTCTCATACTTGAGTCCATCTTCAATAGTGGTATGGTGAATCCACCAAAAGAAGAAACCATCAAGATAAGAAAACTTCTTGAAAAATTTGGCAACGTCGGCGACGCTAACGTCTTTTACTGGTTTCAAAACCGCCGGTCTAGATCTCGTCGCCGACAACGCCAGATGCAACAGGCAACACTTGATCAACAAAAAAATCAGATGCTGATGATGCAACAACCTCAACAAGTTGTTAATGATGTTGGTGCAACTCCAAGTGCAATTTCATGTGATATGGTTCAAACTTATCCAATAATGGGTGGTTTTGGTGGTTCTTCCTCTTGTTTGAATGATTCTTCTGGTTCTTCTTCTTCACCATGTGGTGGTGTTCTTAATGGTCAACAAGGAATGGATGGTTTCTTTTCAGTTTCTTCTCAAATGGGTTTCCTTGGAATTGATCAAACTATGGCTCCATCTTCCCTTTTGTGCCCTCCTTTTTCTTCCAATTTGAACTATCACTGTGGATATGGAGGTGGTGCTACAGGATTGATAACAGTGTTTATCAATGGGATAGCAACAGAAATTGAGGCAGGGCCAATAGACATGAAAACAGTGTTTGGAGATGATGTGATGTTAGTTCATTCTTCTGGTGTGCCAGTTCCCACAAATGAACATGGCATCTTGATTCAATGCTTGCACCATGGTGAAAGCTACTTTCTGGTATCAAAGTCAACACAAGTATGA 831 0.414 MEDKMQQHDPPNNTPTQHGSEKTEPVRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQRQMQQATLDQQKNQMLMMQQPQQVVNDVGATPSAISCDMVQTYPIMGGFGGSSSCLNDSSGSSSSPCGGVLNGQQGMDGFFSVSSQMGFLGIDQTMAPSSLLCPPFSSNLNYHCGYGGGATGLITVFINGIATEIEAGPIDMKTVFGDDVMLVHSSGVPVPTNEHGILIQCLHHGESYFLVSKSTQV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02912 276 ProSiteProfiles 'Homeobox' domain profile. 23 88 IPR001356 GO:0003677
Trre13g02912 276 Pfam Homeodomain 27 87 IPR001356 GO:0003677
Trre13g02912 276 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g02912 276 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 273 IPR044558 GO:0003700|GO:0048830
Trre13g02912 276 Gene3D - 25 96 - -
Trre13g02912 276 SUPERFAMILY Homeodomain-like 20 94 IPR009057 -
Trre13g02912 276 SMART HOX_1 25 92 IPR001356 GO:0003677
Trre13g02912 276 FunFam WUSCHEL-related homeobox 11 27 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02912 Trre-Chr13 28928117 28931825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02912 5 276 Wox Gene Family AT3G03660 49.827 5.83e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre13g02912 Homeodomain 9.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02912 - - gmx:100791266 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02912 13 28928117 28931825 Trre13g02912 13 28928117 28931825 ECH