Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02908 ATGGAAGAAATGGTTATCCTTTTAGGAGCACACACTGTTGGATTTACTCATTGTAGTTTCATTAAAAATAGGATTAATAATCAAAGTTTTTTAATGGATAATGATTTAAGAAAAAGGTTGGTTGAGTTTTGTGGTGTTGAAGGTAAAGACCCACTTGTGTTTTTGGATCAAAACACTTCTTTTGTGTTTGATAATCAATTTTATAATCAAATTTTGTTGGGGAGAGGTATGTTGTCTCTTGATCAAAATTTGGCTTTGGATTCAATTTCGAAAGGAGTTGTGACAAGCTTTGCTAGAAATGGAGAGAGTTTTCTAGAGAGATTTGCTGATGCAATGATAAAGTTGGGAAAGATTGATGTTTTAGTTGGAAATCAAGGAGAGATTAGGAAGAATTGCAGAGTTTTTAATTAA 411 0.3187 MEEMVILLGAHTVGFTHCSFIKNRINNQSFLMDNDLRKRLVEFCGVEGKDPLVFLDQNTSFVFDNQFYNQILLGRGMLSLDQNLALDSISKGVVTSFARNGESFLERFADAMIKLGKIDVLVGNQGEIRKNCRVFN 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02908 136 Gene3D Peroxidase, domain 2 2 116 - -
Trre13g02908 136 SUPERFAMILY Heme-dependent peroxidases 2 136 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre13g02908 136 PRINTS Plant peroxidase signature 54 69 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02908 136 PRINTS Plant peroxidase signature 70 87 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02908 136 PRINTS Plant peroxidase signature 2 14 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02908 136 PRINTS Plant peroxidase signature 110 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02908 136 Gene3D - 117 133 - -
Trre13g02908 136 ProSitePatterns Peroxidases proximal heme-ligand signature. 3 13 IPR019793 -
Trre13g02908 136 FunFam Peroxidase 1 115 - -
Trre13g02908 136 Pfam Peroxidase 2 100 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02908 136 PANTHER - 2 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02908 136 PRINTS Haem peroxidase superfamily signature 3 18 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02908 136 PRINTS Haem peroxidase superfamily signature 56 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02908 136 ProSiteProfiles Plant heme peroxidase family profile. 1 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02908 Trre-Chr13 28831429 28831839 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02908 3 136 Peroxidase AT4G26010 45.185 1.56e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02908 K00430 - gmx:100820340 162.925