Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02901 ATGGCAGACCCTACATCATCCATCTACAATTTCCTTTCAAAAGAAGGTGCAAAAAGACATTACCCCCAGCTACTACCACCTCCTAATTCACCACGCAGTTTTCAATGCCATTTCTGTCACCGCCACTTCTACTCGTCTCAAGCACTTGGAGGCCACCAAAACGCACACAAATTCAAGAGAGCAGCTGCAAGGAGATCAACCAATCCCTTCATCCATTTTTATCATCATCATCATTATAATAATAATGGGCCTGTTCACTCTTCTTCTCTCAGGCCCAAGCCCAACCCTGAATTAGAACCTCCTCCCCTTTTCCACAATTACCCCTATTTGCTTGAAGTTGAGCCTTTTGATAACAATGTTCCTCCTTCTCCTCAATCTTCTAACCATGTCAATCTTGACCTCACTCTTCGCTTGTGA 417 0.4388 MADPTSSIYNFLSKEGAKRHYPQLLPPPNSPRSFQCHFCHRHFYSSQALGGHQNAHKFKRAAARRSTNPFIHFYHHHHYNNNGPVHSSSLRPKPNPELEPPPLFHNYPYLLEVEPFDNNVPPSPQSSNHVNLDLTLRL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02901 138 MobiDBLite consensus disorder prediction 119 138 - -
Trre13g02901 138 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Trre13g02901 138 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Trre13g02901 138 PANTHER ZINC FINGER PROTEIN 4-LIKE 27 93 - -
Trre13g02901 138 MobiDBLite consensus disorder prediction 82 101 - -
Trre13g02901 138 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02901 Trre-Chr13 28620333 28620749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02901 31 77 C2H2 Transcription Factor Family AT1G24625 59.574 1.47e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02901 - - mtr:11430154 171.014