Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02889 ATGTTCTTCATAGGTTATAATGAATTCTGCTTTGTGCTTTCTTCATCTGTTTTGTATTTGCAGCTGACTATGTGGGACTTGAGAATGAAAGGAAACGGTGGTTGTGTTCATCGGATTAGTGGTACCCCTGGTGATTCCTTATATTCTGTTTGCAGTTCTTCCACTGGTAATATTGCCGTTTGTGGGGTTGATCGTACAGTGACTATTTATGATCCTCGCAGATGGTCCGCATTGTCTAGATGGGTGCATTGTTCAAAATTTGAGGTGATTTTGTTCTCATTCTCAACTTGGCTTGCCTGGTTTTTAGCTGGAAAATATCATGCTTACCTGAAATCGTGGATACCGTCTTCCATGGACAGCTTTGAGCTTGCTTTGCAGTTTGGAATATATGTCATTGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCCACGACTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCATCTCAGGGTGTATTGATCAAAGGGGGGCAAGCTTTGGAAAAGTGCACATAA 519 0.4277 MFFIGYNEFCFVLSSSVLYLQLTMWDLRMKGNGGCVHRISGTPGDSLYSVCSSSTGNIAVCGVDRTVTIYDPRRWSALSRWVHCSKFEVILFSFSTWLAWFLAGKYHAYLKSWIPSSMDSFELALQFGIYVIVIACPCALGLATTTAVMVGTGVGASQGVLIKGGQALEKCT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02889 172 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 89 170 - -
Trre13g02889 172 Pfam E1-E2 ATPase 89 156 - -
Trre13g02889 172 SUPERFAMILY WD40 repeat-like 22 96 IPR036322 GO:0005515
Trre13g02889 172 Gene3D - 13 134 IPR015943 GO:0005515
Trre13g02889 172 SUPERFAMILY Calcium ATPase, transmembrane domain M 85 169 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02889 Trre-Chr13 28468653 28469692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02889 89 170 Primary Pumps ATPases AT1G63440 87.805 2.14e-44 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02889 K17686 - jre:109014454 148.288