Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02888 ATGATACCAGTCATTCTCTTTTGGTGTGTATTTCCGCTGGCATTGGCTGATAATCTGCAAGCCGGTTTCTACTCCACATCGTGTGGAGAAGCAGAGTTTATCGTGGAGAAGGTTGTGCAGAAGCGATTAAGCCACGACAAATCTATAACGCCAGCTTTGCTTCGCATGCATTTCCATGACTGTTTTGTCCGAGGCTGTGATGCATCCCTTCTCATAGATCCTACAAACAAAACCGTTTCAGAGAAAAAAGATGACTCGAACGCCAGTGTTAGAGGCTTTCATCTAATTGACGAAGTAAAGGAAGCACTTGAAGCTGCTTGTCCTTCAACAGTATCATGTGCAGATATCATAGCTCTTGCTACAAGAGATGCTGTGGCTTTATCAGGAGGACCAAAATACAGCGTTCCGACTGGAAGACGTGACGGATTGGTCTCCAACCAAGCTGATGTTGAGTTACCAGGACCTGACATACCAATTCCAGTACTGTCACAATTTTTTGTTGCAAAAGGAATTACAAATGAAGAAATGGTGGCCCTGTTAGGAGCACATACGGTCGGTGTTTCTCACTGTGGATTTTTCGAGGATAGGCTAGCAGCTGGTTTTGGAGGGAAACCTGATCCTACAATGGATCCATCATTGGCTTCCAAGCTTATCAAGTTGTGCAAATCAAGTGCTGATGGTGCCGCATTTTTGGACCAGAACACCTCTTTTGTTTTGGATAATGAATATTTCAAGCAACTTCTTCTTATGAGAGGTATTATGCAGATTGATCAACAGCTGGCTTTGGACGAATCCACAAGTGCTTTTGTATCTGGTTTTGCTTCAGATGGTGATAATTTTATCAAGAGTTTTGGAAGTGCTATGATTAAGATGGGCAAAGTTGGGGTTTTAGTGGGGAAAGAAGGAGAAATTCGGAAGAATTGCAGGGTGTTCAACAAAGGAAGTTAG 948 0.4304 MIPVILFWCVFPLALADNLQAGFYSTSCGEAEFIVEKVVQKRLSHDKSITPALLRMHFHDCFVRGCDASLLIDPTNKTVSEKKDDSNASVRGFHLIDEVKEALEAACPSTVSCADIIALATRDAVALSGGPKYSVPTGRRDGLVSNQADVELPGPDIPIPVLSQFFVAKGITNEEMVALLGAHTVGVSHCGFFEDRLAAGFGGKPDPTMDPSLASKLIKLCKSSADGAAFLDQNTSFVLDNEYFKQLLLMRGIMQIDQQLALDESTSAFVSGFASDGDNFIKSFGSAMIKMGKVGVLVGKEGEIRKNCRVFNKGS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02888 315 FunFam Peroxidase 22 158 - -
Trre13g02888 315 PRINTS Plant peroxidase signature 28 47 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Plant peroxidase signature 52 72 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Plant peroxidase signature 91 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Plant peroxidase signature 110 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Plant peroxidase signature 174 186 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Plant peroxidase signature 230 245 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Plant peroxidase signature 129 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Plant peroxidase signature 286 299 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Plant peroxidase signature 246 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 CDD secretory_peroxidase 18 311 IPR033905 GO:0004601|GO:0042744
Trre13g02888 315 Pfam Peroxidase 35 276 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 ProSitePatterns Peroxidases proximal heme-ligand signature. 175 185 IPR019793 -
Trre13g02888 315 PRINTS Haem peroxidase superfamily signature 50 64 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Haem peroxidase superfamily signature 111 128 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Haem peroxidase superfamily signature 232 247 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 PRINTS Haem peroxidase superfamily signature 175 190 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 ProSiteProfiles Plant heme peroxidase family profile. 18 312 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 FunFam Peroxidase 153 291 - -
Trre13g02888 315 SUPERFAMILY Heme-dependent peroxidases 18 312 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 Gene3D Peroxidase, domain 2 153 291 - -
Trre13g02888 315 Gene3D - 22 312 - -
Trre13g02888 315 PANTHER - 5 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02888 315 ProSitePatterns Peroxidases active site signature. 50 61 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02888 Trre-Chr13 28351089 28352222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02888 6 313 Peroxidase AT4G26010 57.282 1.06e-122 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02888 K00430 - gmx:100777946 388.267