Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02887 ATGATGATACCAGTCATTCTCTTTTGGTGTGTATTTCCGCTGGCATTGGCTGATAATCTGCAAGCCGGTTTCTACTCCACATCGTGTGGAGAAGCAGAGTTTATCGTGGAGAAGGTTGTGCAGAAGCGATTAAGCCACGACAAATCTATAACGCCAGCTTTGCTTCGCATGCATTTCCATGACTGTTTTGTCCGAGGCTGTGATGCATCCCTTCTCATAGATCCTACAAACAAAACCGTTTCAGAGAAAAAAGATGACTCGAACGCCAGTGTTAGAGGCTTTCATCTAATTGACGAAGTAAAGGAAGCACTTGAAGCTGCTTGTCCTTCAACAGTATCATGTGCAGATATCATAGCTCTTGCTACAAGAGATGCTGTGGCTTTATCAGGAGGACCAAAATACAGCGTTCCGACTGGAAGACGTGACGGATTGGTCTCCAACCAAGCTGATGTTGAGTTACCAGGACCTGACATACCAATTCCAGTACTGTCACAATTTTTTGTTGCAAAAGGAATTACAAATGAAGAAATGGTGGCCCTGTTAGGAGCACATACGGTCGGTGTTTCTCACTGTGGATTTTTCGAGGATAGGCTAGCAGCTGGTTTTGGAGGGAAACCTGATCCTACAATGGATCCATCATTGGCTTCCAAGCTTATCAAGTTGTGCAAATCAAGTGCTGATGGTGCCGCATTTTTGGACCAGAACACCTCTTTTGTTTTGGATAATGAATATTTCAAGCAACTTCTTCTTATGAGAGGTATTATGCAGATTGATCAACAGCTGGCTTTGGACGAATCCACAAGTGCTTTTGTATCTGGTTTTGCTTCAGATGGTGATAATTTTATCAAGAGTTTTGGAAGTGCTATGATTAAGATGGGCAAAGTTGGGGTTTTAGTGGGGAAAGAAGGAGAAATTCGGAAGAATTGCAGGGTGTTCAACAAAGGAAGTTAG 951 0.4301 MMIPVILFWCVFPLALADNLQAGFYSTSCGEAEFIVEKVVQKRLSHDKSITPALLRMHFHDCFVRGCDASLLIDPTNKTVSEKKDDSNASVRGFHLIDEVKEALEAACPSTVSCADIIALATRDAVALSGGPKYSVPTGRRDGLVSNQADVELPGPDIPIPVLSQFFVAKGITNEEMVALLGAHTVGVSHCGFFEDRLAAGFGGKPDPTMDPSLASKLIKLCKSSADGAAFLDQNTSFVLDNEYFKQLLLMRGIMQIDQQLALDESTSAFVSGFASDGDNFIKSFGSAMIKMGKVGVLVGKEGEIRKNCRVFNKGS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02887 316 FunFam Peroxidase 154 292 - -
Trre13g02887 316 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Plant peroxidase signature 247 264 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Plant peroxidase signature 175 187 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Plant peroxidase signature 130 145 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Plant peroxidase signature 111 121 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Plant peroxidase signature 53 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Plant peroxidase signature 231 246 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Plant peroxidase signature 29 48 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Plant peroxidase signature 92 105 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 ProSiteProfiles Plant heme peroxidase family profile. 19 313 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 ProSitePatterns Peroxidases proximal heme-ligand signature. 176 186 IPR019793 -
Trre13g02887 316 PANTHER - 5 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 Gene3D Peroxidase, domain 2 154 292 - -
Trre13g02887 316 ProSitePatterns Peroxidases active site signature. 51 62 IPR019794 GO:0004601
Trre13g02887 316 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Haem peroxidase superfamily signature 130 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Haem peroxidase superfamily signature 233 248 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Haem peroxidase superfamily signature 112 129 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 PRINTS Haem peroxidase superfamily signature 51 65 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 Gene3D - 23 313 - -
Trre13g02887 316 FunFam Peroxidase 23 159 - -
Trre13g02887 316 SUPERFAMILY Heme-dependent peroxidases 19 313 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre13g02887 316 CDD secretory_peroxidase 19 312 IPR033905 GO:0004601|GO:0042744
Trre13g02887 316 Pfam Peroxidase 36 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02887 Trre-Chr13 28351089 28352225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02887 7 314 Peroxidase AT4G26010 57.282 9.78e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02887 K00430 - gmx:100777946 389.808