Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02886 ATGTCTGAGACTGAGAAGAATCCTGGTATTAGGCTATTTGGGTGGAAGATTCCGGTGCCGGAATGTCAAATTCCGACCAACTCTGGACCCATGGATACTTGCAGCAGTACAAAGAAAACCGATGTCGAAATACTTTGTGCAGAAAAAACTGTGCAACAAGACAATTCTTCTGATTCAATGGATAGTAAACAAGAGTCCCATCAAGATATGCAAGAAAAGGAGCCAATAGAAAACTCCAAGTCCGCCGACGATAATACAGAGACTGGTAATTCGGATGAAGATAAAATTTTAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGTTGCAAAAGTTGGGATACCAAGTTTTGTTATTTCAACAACTATAACGTCAACCAACCTCGGCATTTTTGCAAGAATTGTCAAAGGTATTGGACAGCTGGTGGAACGATGAGAAATGTTCCGATAGGTGCTGGTAGGCGGAAGAATAAGCATCTAGCTTCTCAATACCGACAAATTATAGTAACCTCGGACGGAATTCCAACCTCGAGGCTTGAAACAACACCCTCATCCACTCATCACCATACATCAATGGATAACGAGACTGTATTGAAATTTGGTCGCGATACCCCTCTTTGTGAATCGATGGAGTCGATGCTTCATCTTAAAGACCAGAAAAGGAGTTCTGATGCAAATTCCATTAGTTGTGTGCAACATAGAGAGGAACCGTCCCTCTATGGATCATCGGTAACAAATACCAACACTCAAGGAAATGAAGTATCAGAACACAATGCACCAAATTGGTTGCAGTGTTATCCTGTTCCTCCATGGGTATTACCAATGAATCCGGGTTGGAATATGAATAATGTTGCTTCCATGGCAGCAGTTCATCCGACTTCAGCATCCATATGCAACCCGTATAGCACTGTTCCAACTACGATGCAATGGTGTCCGACACCTATGTTGGCAATTCCGGGAATTAGGCCACAAAACATACCTTTGCAACTTGTACCAGCATCAAACTGGAGCGGACCATCACTTTGCCTCTCGCCGCCTTCCTCCACAAGTAACAGTTGCTGCACAGGTAATGGCTCAACAACCCTTGGAAAACACACTAGAGACACCGTTTTCGCAGACGAAGATAAATCAGACAAGTCTGTCCCAGTTCGAAAAACGATTAGAATTAATGTCACAAATGAGGGCCCAATAAGTCCTACTCGGGCCACAATAGCTAACAAGACGCCAACTTAG 1230 0.4341 MSETEKNPGIRLFGWKIPVPECQIPTNSGPMDTCSSTKKTDVEILCAEKTVQQDNSSDSMDSKQESHQDMQEKEPIENSKSADDNTETGNSDEDKILKKPDKIVQCPRCKSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVTSDGIPTSRLETTPSSTHHHTSMDNETVLKFGRDTPLCESMESMLHLKDQKRSSDANSISCVQHREEPSLYGSSVTNTNTQGNEVSEHNAPNWLQCYPVPPWVLPMNPGWNMNNVASMAAVHPTSASICNPYSTVPTTMQWCPTPMLAIPGIRPQNIPLQLVPASNWSGPSLCLSPPSSTSNSCCTGNGSTTLGKHTRDTVFADEDKSDKSVPVRKTIRINVTNEGPISPTRATIANKTPT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02886 409 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
Trre13g02886 409 Pfam Dof domain, zinc finger 101 158 IPR003851 GO:0003677|GO:0006355
Trre13g02886 409 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Trre13g02886 409 MobiDBLite consensus disorder prediction 45 96 - -
Trre13g02886 409 PANTHER CYCLIC DOF FACTOR 2 1 403 IPR045174 GO:0003700|GO:0006355
Trre13g02886 409 MobiDBLite consensus disorder prediction 60 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02886 Trre-Chr13 28346104 28348404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02886 7 406 C2C2-Dof Transcription Factor Family AT5G39660 32.527 3.19e-46 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre13g02886 zf-Dof 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02886 - - cam:101500722 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02886 13 28346104 28348404 Trre13g02886 13 28346104 28348404 ECH