Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02871 ATGGTTTTCTGCGATCATTGTGTCAAAGACGTTATCGCCGAACGATACGATGATTGTTACTTAACTTGTACTTCTTGTGGGAAGGTGTTGGAAGATCAGTTTTATTCTGAGGAGCCAACTTTTTTTAAAAACTCGGCCGGACAGAGCAAGTTATCGGGAACTTATGTGCAATCGGTTCAAAGAGAGATCTCTGAATCTCGTCGAAGGACTTTATATAGAGCTTCTAAAGAAATGGAATATTTAAGTCTCAACCTTGGAGTAACTGACGATAATATGATCAGCCAAGCTTTGGCCTTCTATGAAATAGCACTTGCAAAAAATTTCACCCGGGGACGTAAATCAGAGCAAGTACAGGCTGCATGTCTCTATATTGCATTTCGGCAAAATAAAAAGCCATACTTTCTTATTGAATTTTCAAATAGTTTAAGGATAAATGTCTACAAGCTTGGAGAAGTTTTTTTGCAGCTCTGTGAAGTCTTAAGGCTTAATAATCACCCACTTGTTAAAAAGCCTATTGATCCCTGTCTTTTTCTTTACAAATATACTAGTAATTTGTTAGGCCACAGAAATGGGGTTGTCTCTGAAACTGCACTGAGCATTATTAAAGATATGAACCGTAACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATTTGCTGCTGCATTATTCATCTCTAGTAATGGACATGGTCATAACATCTCTAAGACAGATATTCTAAGACTCTTCCATGTATGTGAGGCAACATTGACCAAGCGATTGATAGAATTTGAGAATACAGACTCTTCTTGCTTGACAGTTGAGGAGTTGAATGCAATGGCAAAAGAGTACGAAAAAACTCCAGTTGTTTTGCCAAACAGTGAATTTAAAGGATCTACTTCAAACGATCTAGTGTGTGAGCACAAAGATAGCAATGTGGCCTGTTTTGCACTCGGACTATGTGAAGCTTGTTACAAGGATTTTGATATGCTCTCGGGAGGATTTGGTGGTGGTTTGGACCCTCCTGCGTTCCAGCGTGCTGAGAGGGAGAGAGTAAAGAAAACAGTTTCTAAGGAAAGTGCAGAAGTGGTGAAGGCATCAAATAGTGCATGCAAGGGACAGAAAGAAGATTTGCCTGCCTCTATGCTAGAAAGGGATGAAACCAGTGCGGAAGATGACACCAGTGCGGAAGATCAAGATGAATCAGGAAATTTCTCTGATATCGATGACCGAGAGGTTGACGGGTACCTTTTCAACGAGGAAGAGAAACATTACAAGAAGATATATTGGGAAAATGAGAACCGCGAGTATCTTGCGGAGCAAGCAGTCAAGGAAGCAGCTGCAGCAGCTGCGAAGAAAATTTATGAAGCAAATTTGAAAAACTGTCCAGTAGAATCAAGAGAACTTTATGAATCTACTACTGCAGCTGTGGCAAAATCCAGAAAGAGACGAGCTCAGCAGGCAAAAAATTCAGGGCCTGCTAAATCTGCTGCAGAAGCCGCTTGTCAAATGGTGAAAAAAAAGAGGCTCAGTAGCAAAGTCAATTTTGAGTGCCTGGCAAAATTATTTGAAAACGAACCAGCAGATGTGCGTGAACCCAAGAAAGTACGATTTGATCTAGCCTCTGATGATCATGACAAATTTCAGTCTGAGGTTCAAGACTCAAAGGATGATGAGCTTGGATCAGAGGATAATTTTGAGGATGGTGACAAGGATTGGTGTAATAATGAAAATATGGATGAGACATATTTTCCCGAGGAAGATGGTTATAATTATGATGAGGATCATTACTGA 1773 0.4033 MVFCDHCVKDVIAERYDDCYLTCTSCGKVLEDQFYSEEPTFFKNSAGQSKLSGTYVQSVQREISESRRRTLYRASKEMEYLSLNLGVTDDNMISQALAFYEIALAKNFTRGRKSEQVQAACLYIAFRQNKKPYFLIEFSNSLRINVYKLGEVFLQLCEVLRLNNHPLVKKPIDPCLFLYKYTSNLLGHRNGVVSETALSIIKDMNRNWMQTGRKPSGLFAAALFISSNGHGHNISKTDILRLFHVCEATLTKRLIEFENTDSSCLTVEELNAMAKEYEKTPVVLPNSEFKGSTSNDLVCEHKDSNVACFALGLCEACYKDFDMLSGGFGGGLDPPAFQRAERERVKKTVSKESAEVVKASNSACKGQKEDLPASMLERDETSAEDDTSAEDQDESGNFSDIDDREVDGYLFNEEEKHYKKIYWENENREYLAEQAVKEAAAAAAKKIYEANLKNCPVESRELYESTTAAVAKSRKRRAQQAKNSGPAKSAAEAACQMVKKKRLSSKVNFECLAKLFENEPADVREPKKVRFDLASDDHDKFQSEVQDSKDDELGSEDNFEDGDKDWCNNENMDETYFPEEDGYNYDEDHY 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02871 590 FunFam Transcription factor IIIB subunit 173 262 - -
Trre13g02871 590 Pfam Brf1-like TBP-binding domain 399 517 IPR011665 -
Trre13g02871 590 SUPERFAMILY Cyclin-like 172 259 IPR036915 -
Trre13g02871 590 Gene3D Single helix bin 392 441 - -
Trre13g02871 590 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Trre13g02871 590 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Trre13g02871 590 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Trre13g02871 590 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Trre13g02871 590 MobiDBLite consensus disorder prediction 533 590 - -
Trre13g02871 590 Gene3D - 173 262 - -
Trre13g02871 590 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Trre13g02871 590 Gene3D - 63 165 - -
Trre13g02871 590 SUPERFAMILY Zinc beta-ribbon 2 45 - -
Trre13g02871 590 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 507 IPR000812 GO:0006352|GO:0070897
Trre13g02871 590 MobiDBLite consensus disorder prediction 383 398 - -
Trre13g02871 590 SUPERFAMILY Cyclin-like 84 163 IPR036915 -
Trre13g02871 590 MobiDBLite consensus disorder prediction 533 549 - -
Trre13g02871 590 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
Trre13g02871 590 Pfam Transcription factor TFIIB repeat 172 259 IPR013150 GO:0017025
Trre13g02871 590 MobiDBLite consensus disorder prediction 360 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02871 Trre-Chr13 28192492 28207730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02871 1 501 Inorganic Solute Cotransporters AT2G01280 40.039 9.88e-94 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02871 K15196 - gmx:100817609 669.077