Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02855 ATGCGCAATAACAACAGCTCTTCACAAGGTAGCAGAAGCAACAATCACAACAACATGAGCATTCTATCTTCCCGAACAAGTTCACGTTCTGTAACAGAAACCGTTAACGGTTCACACAAGTTCGTAATTAAGGGATATTCACTTGCAAAAGGAATGGGAGTTGGAAAACACATAGCAAGCGAAACTTTCACCGTCGGTGGTTATCAATGGGCAATTTACTTCTATCCCGACGGTAAAAATCCTGAAGATAATTCTGCATATGTTTCTGTTTTCATTGCTCTTGCTTCTGAAGGTACCGATGTTAGAGCTCTTTTTGAACTCACTTTGCTTGATCAGAGTCCTAATGGAAAGCATAAGGTTCATAGTCACTTTGATCGATCTCTTGAAAGTGGTCCTTATACTCTCAAGTATAGAGGCAGCATGTGGGGTTATAAGCGGTTTTTCAAACGTGCTCAACTTGAGGCCTCGTCCTTCCTTAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTTGTGTCGTCCATAGATTGTTCTAAACTGACCACCATACATGTGCCTGAATCTGATATTGGATCGCATTTCGGCATGCTGTTAGAGAATGAGGAAGGATCGGATGTTACTTTCTCTGTTGGTGGAGAAAGGTTTCATGCACACAAGCTTGTTATGGCAGCTCGGTCACCTGCATTTGAAGCCGAGTTTTTCAACCGGATGGAGGAAGACGACTGTGATGTAGTTGTTACAGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAAAGACACTCTTATAGAAGATGAAGAGTTCTTCATGTCACGCTCATCATTCATGCCTTCAATATCTGAAACATTTGCAGCAAAATTATTAGCTGCTGCGGAAAAGTATGATTTGCCTAGACTTAAGCTGATGTGTGAGTCTGTACTTTGCAAAGAAATCTCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCCGATCGCTATCATGCTACGGAGTTGAAGTCCATCTGTCTACAGTTTTCTGCTGAAAACCTCGTTGCTGTGATGCAGTCTGATGGTTTTGAGTATCTAAAGGAACACTGTCCGTTGCTGCAATCAGAGCTGCTTAAGACAGTTGCAGGAGGCGAAGAGGAATTTAGTGGAGAAGGAAAATGCCGAAGTGTGTGGGCCCAAGTTTCTGATGGCGGTGAGACTAATGATAGGAGCGTAAGACAACAAACTTGGGAAAACGGAGTTGAAAGAGGTCAGAACTTATGGGTTAACCTTTCTGATGATGTTAACAATGATAGGAGTCCAGGGCAAGAAGCTTGA 1323 0.4218 MRNNNSSSQGSRSNNHNNMSILSSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLTTIHVPESDIGSHFGMLLENEEGSDVTFSVGGERFHAHKLVMAARSPAFEAEFFNRMEEDDCDVVVTDMEPKVFKALLHFIYKDTLIEDEEFFMSRSSFMPSISETFAAKLLAAAEKYDLPRLKLMCESVLCKEISIDSVAYILALADRYHATELKSICLQFSAENLVAVMQSDGFEYLKEHCPLLQSELLKTVAGGEEEFSGEGKCRSVWAQVSDGGETNDRSVRQQTWENGVERGQNLWVNLSDDVNNDRSPGQEA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02855 440 CDD MATH 37 170 IPR002083 GO:0005515
Trre13g02855 440 FunFam BTB/POZ and MATH domain-containing protein 4 35 174 - -
Trre13g02855 440 ProSiteProfiles BTB domain profile. 206 272 IPR000210 GO:0005515
Trre13g02855 440 Pfam BTB/POZ domain 198 315 IPR000210 GO:0005515
Trre13g02855 440 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 25 373 IPR045005 GO:0016567
Trre13g02855 440 SUPERFAMILY TRAF domain-like 33 172 - -
Trre13g02855 440 ProSiteProfiles MATH/TRAF domain profile. 36 170 IPR002083 GO:0005515
Trre13g02855 440 SMART math_3 41 153 IPR002083 GO:0005515
Trre13g02855 440 CDD BTB_POZ_BPM_plant 192 314 - -
Trre13g02855 440 Gene3D - 316 390 - -
Trre13g02855 440 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g02855 440 SUPERFAMILY POZ domain 184 315 IPR011333 -
Trre13g02855 440 FunFam BTB-POZ and math domain 1 182 311 - -
Trre13g02855 440 SMART BTB_4 206 317 IPR000210 GO:0005515
Trre13g02855 440 Gene3D Potassium Channel Kv1.1; Chain A 182 311 IPR011333 -
Trre13g02855 440 CDD BACK_AtBPM-like 314 375 IPR034090 -
Trre13g02855 440 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 35 174 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02855 Trre-Chr13 27888763 27894109 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre13g02855 BTB 7.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02855 K10523 - gmx:100809683 776.933