Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02848 ATGGCTTCTGTCTTTCTTGTGTTGGTTACTTTGTTACTTTCTATAAACCATTCAGAGCAACTTCAATCCTCACACTCTCAAACCCTTTTAAGAATTCAACAGCTATTGAATTTTCCTTCTGCTTTAAGGAATTGGAATAATTCCACAGATTTTTGCAACACAGATTCAAACTCTTCACTCACTGTAGTATGCTATGAAGATACAATAACTCAACTTCATATAATAGGTGAAGGAAAAACTCAACCATTGCCGAAAAATTTCTCTATTGATTCATTTGTCACAACACTAGTAAAGCTTCCAAGTTTGAAGGTTCTTACATTGGTTTCTCTTGGTATTTGGGGTCCATTACCTGGTAAAATTTCTCGGTTATCGTCACTGGAAATAGTTAATATGAGTTCGAATCATCTCTACGGTTCGATCCCTATGGAATTCTCTTCGCTCTCGAATCTTCAGACACTCATTCTTGACAATAACATGTTTTCTGGTCAACTTCCTATTTGGATTGATTTGCTTTCAGAGTTAACTGTGTTGAGTTTGAAAAACAATTTGTTCAATGGATCGTTACCGAATTCGGTTAGTAACTTGGAGAATTTGAGAATTCTTTCACTTTCTCATAATAAGTTATATGGATTAGTACCTGATTTGAGTCATTTGAGAAATCTTCAAATACTTGAATTGGATAGTAATGCTTTTGGACCTCAATTTCCTAAGCTTGGTAACAAGTTGGTTACTATTGTGCTAAGAGATAACAAATTCAGGTCTGCTATTCCTGCTGAAGTGAGCTCATATTATCAGCTCGAGCGATTCGATATTTCATCGAATACTTTTGTAGGGCCATTCCAGGCAGCATTGTTGTCACTTCCTTCTATTACTTACCTCAACATTTCTAGGAACAAATTAACTGGAATGCTTTTTGAGAATGTTTCTTGCAATTCTGAGATTGCAGTTGTTGATTTATCGTCAAATCTTTTAACTGGGAGCTTACCAAAATGTTTAGTTTCAAATTCTAGTGATAGGACTGTTTTGTATGCTAGAAATTGTCTCGAGAAAACGAATCAAAATCAGCATCCGTCGCCTTTTTGTCACACTGAAGCCTTAGCAGTTGGAATATTACCTGAGACAAAGAAGAAAAAACAAGTATCAAAGGTAGTTCTTACCCTTGGTATAGTAGGTGGAATTCTTGGAGGAGTAGCACTTGCTTTTCTGATTTTATTTATTGTTAGAAGAGGGAATGCTAGAAGCAGAATGAAGAATCCTCCAACAAGAATAATATCAGAGAATGCAGCTTCTGGATACACCTCTAAGTTGCTTTCTGATGCAAGATATATATCTCAAACAAAGAAGTTTGGAGCACTTGGCCTACCAAACTATAGGAGTTTTTCATTGGAAGAGATTGAGGAAGCTACAAACAACTTTGACACGGCTTCTTTAATCGGTGAAGATTCTTATGGAGAGATGTACAGAGGTCAGCTGAAGAATGGTTCGTTCGTTGTTATTAGATGTATCAAAATGAAAAAAAGATACAGTACTCAAACCTTTATGCAGCACATGGAGCTTATATCAAAACTTAGGCATCGTCATTTAGTCAGCGCTATTGGACATTGCTTCGAATGTTCTCTAGAAGATTCAAGTGTCAGCAAAATATTTCTCGTCTTTGAATATGTACCTAATGGCACACTCAGGAGCTGGACGTCTGATGGGCACACTGGGAAATCTCTAAATTGGACGCAACGCATAGGAGCTGCAATTGGAGTAGCAAAAGGAATTCAGTTTTTGCATACAGGAATTGTCCCTGGTGTATATTCAAACAATATCAAAATAGAAGATATTTTATTAGATCGAAATTTTGTTGCAAAAATTAGCAGTTATAACCTGCCTCTGTTATCTAACATAGGAAAGGTTCGGCGTGGAAATTCATCTAATGAATCCAAACATTCTAGTATCAATAAAAGTGGAAGTCATGAAGATAAGTGTGATATATATGATTTTGGAGTAATACTACTTGAAATCATTCTAGGAAGGACAATTAAGACAACAAATGATGCAGAAGCTTTTAAGGATCTGTTGCAAGCAAGCTTAGGAGCTGATGAGGATTCTAGGAGGAGCATTGTTGATCCAGCGATTCGCAAGGCATGTTTGAGTCAATCATTGAAGACAATGATGGAGATATGTGTGAAGTGTCTGTTTAAAGATCCAGCAGAAAGGCCCTCCACAGAGGATGTTCTATGGAATTTGCAATTTGCTGCACAAGTACAGGATGCTTGGAGAGAGGATTCTCAAAGTAGTGAAGGGTCACCAGGTTCTCCTTTAGAGGCTCGAAGACAGGCCTTCCATTAG 2337 0.371 MASVFLVLVTLLLSINHSEQLQSSHSQTLLRIQQLLNFPSALRNWNNSTDFCNTDSNSSLTVVCYEDTITQLHIIGEGKTQPLPKNFSIDSFVTTLVKLPSLKVLTLVSLGIWGPLPGKISRLSSLEIVNMSSNHLYGSIPMEFSSLSNLQTLILDNNMFSGQLPIWIDLLSELTVLSLKNNLFNGSLPNSVSNLENLRILSLSHNKLYGLVPDLSHLRNLQILELDSNAFGPQFPKLGNKLVTIVLRDNKFRSAIPAEVSSYYQLERFDISSNTFVGPFQAALLSLPSITYLNISRNKLTGMLFENVSCNSEIAVVDLSSNLLTGSLPKCLVSNSSDRTVLYARNCLEKTNQNQHPSPFCHTEALAVGILPETKKKKQVSKVVLTLGIVGGILGGVALAFLILFIVRRGNARSRMKNPPTRIISENAASGYTSKLLSDARYISQTKKFGALGLPNYRSFSLEEIEEATNNFDTASLIGEDSYGEMYRGQLKNGSFVVIRCIKMKKRYSTQTFMQHMELISKLRHRHLVSAIGHCFECSLEDSSVSKIFLVFEYVPNGTLRSWTSDGHTGKSLNWTQRIGAAIGVAKGIQFLHTGIVPGVYSNNIKIEDILLDRNFVAKISSYNLPLLSNIGKVRRGNSSNESKHSSINKSGSHEDKCDIYDFGVILLEIILGRTIKTTNDAEAFKDLLQASLGADEDSRRSIVDPAIRKACLSQSLKTMMEICVKCLFKDPAERPSTEDVLWNLQFAAQVQDAWREDSQSSEGSPGSPLEARRQAFH 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02848 778 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase isoform A 240 357 - -
Trre13g02848 778 ProSiteProfiles Leucine-rich repeat profile. 197 219 IPR001611 GO:0005515
Trre13g02848 778 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 445 554 - -
Trre13g02848 778 Gene3D Ribonuclease Inhibitor 237 357 IPR032675 -
Trre13g02848 778 ProSiteProfiles Protein kinase domain profile. 472 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02848 778 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 22 239 - -
Trre13g02848 778 SUPERFAMILY Protein kinase-like (PK-like) 454 747 IPR011009 -
Trre13g02848 778 Gene3D Transferase(Phosphotransferase) domain 1 555 764 - -
Trre13g02848 778 SUPERFAMILY L domain-like 32 349 - -
Trre13g02848 778 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 555 761 - -
Trre13g02848 778 Pfam Protein tyrosine and serine/threonine kinase 476 742 IPR001245 GO:0004672|GO:0006468
Trre13g02848 778 Gene3D Ribonuclease Inhibitor 22 236 IPR032675 -
Trre13g02848 778 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 71 745 - -
Trre13g02848 778 Gene3D Phosphorylase Kinase; domain 1 443 554 - -
Trre13g02848 778 MobiDBLite consensus disorder prediction 755 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02848 Trre-Chr13 27775243 27778713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02848 38 766 Miscellaneous Gene Families AT3G03770 62.807 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre13g02848 PK_Tyr_Ser-Thr 9.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02848 - - gmx:100807539 1229.16