Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02833 ATGGCTCTCATTTTTCATCATCTTCTTATTCACTGTATTCTCTTCTTCTTCTTCACAACCCATCACGCAAATGCTTCCATTCCCAACGACGCATTGTCTCTTCTCACCTTCAAACGCTTCGTCTCTTCTGACCCTTCAAATCTTCTATCCGGTTGGACCCATCAAAAATCTTCCACATTCTGTAACTGGCACGGCGTCACTTGCGGCGGCGGTGGTGGTGACGGAAGAGTGACGTCACTTAATGTTACCGGTCTTCGTGGCGGTGAATTGTCGGCTTCCATTGGAGATTTGTCTGAGCTTAAAGTTTTGTCTGTTCCAGGAAACATGTTTTCCGGTGAGATTCCGGTGAGTTTACTGAATCTGTTGGAACTTGAGGTTCTTGAGGTTCAAGGAAACAACTTTTCAGGGAAAGTTCCTTTTTTTCAGATGAGTTGTTTTAAAAAACTTAGACTTGTTAATCTCTCTGGTAATGCTTTTTCTGATTCTATTCCTAATGGGTTAGTTTTTTCTAGGAATGTGAAAATTGTTGATTTGTCTAATAATCAATTTTCTGGTTCTATTCCTTTGAATGATTCTAGTAGTTGTGATTCTTTGAAGTATTTGAAACTGTCTAATAATTTTTTGGGGGGTGAGATTCCACCACAAATTGGGAAATGTAGAAACTTGAGGACCCTTTTGGTTGATGGGAATATATTGGAAGGTGAAATCCCTTATGAGATTGAGAATGTTGTTGAACTTAGAGTTTTAGATGTTTCTAGAAACAGTCTCACTGGAGGGATCCCTAAACAGTTAGCTAATTGTTTGAAATTGTCTGTGCTTGTGCTTACTGATTTGTTTGATGATCGCCGCGGCGGTTTTGATGAGGTGGACGATAGGTTTAGAGGTGAATATAATGCTTTTGATGGGAATATTCCTCATGAAGTGTTGTTGCTTACGAGTTTGCGGGTTTTGTGGGCGCCTAGAGCGAATCTTGGTGGACATTTGCCTCCTGTTGGGTGGACAGATTCATGCTCTCTTAGAGTACTCAATTTGGCTGAGAATTATGTTACTGGTGTTGTATCCGAGAGTTTGGGGATGTGTAAGAATTTGTCGTTTTTGGACTTGAGTTCTAACAATTTAGTCGGATACGTATCTCTGCATCAGCTTCGGGTTCCTTGTATGACGTATTTCAACGTAAGCAGGAATAATATATCTGGCATGCTTCCGGGGCTTAGGAAAGAAAGGTGTAAACTGACAAGTGTCGTTGCGCTAGAATCTGCATTTCTAGAATTGGAAGGTTTGAATGATGTATACTTTAACATTCCTGTTTTGAAATTTCAACAGAATGCTTTCATCGGATCAGGTTTCGAAGAGACTATTGTCGTTAGCCATGATTTCAGCTGGAACAGTTTTGCGGGGTCTTTACCGTTGTTTTTTCTTGGAGACAATCTTTTTACTCCTACTCGTAATGTATCCTACATGCTGTCTCTCAATAATAATAAATTCAACGGAACTATTCCATACCGACTAGTTTCAAACTGTAACGACCTCAAGACATTGTCGGTTAACCTGAGTACGAATCAACTATCCGGTGAAATTTCCCAAGCGTTGTTTCTTGACTGCCTGCAGTTGACGGATTTTGAAGCGGCATACAATCAAATTGATGGATCAATTGGACCTGGTATAGGTGAGTTGGCGTTGCTTCAGTGTCTTGATTTGAGTGGTAACAAACTATCTGGAGCACTGCCGAATGAGTTGGGAAACCTGAAAAACCTAAAATGGATGCTTTTAGGAGGAAACAATCTGACAGGGGAAATTCCTTACAAATTTGGTAGATTGACGTCCCTCGTTGTTTTGAATGTATCTCACAATGCTCTATTTGGAACAATTCCAACAACTTTGACAAATGCAACAAATCTTGAAATTCTGTTACTAGATCACAACAACCTCTCTGGAGAAATACCTGTATCTGTTTCTGATCTTTCCAAGCTTGTTCAACTAGATGTTTCTTTCAACAATCTTTCCGGTCATATTCCTCATCTTCAACACCCGAGTCATTGCGATTCATATATAGGGAATAAAAACCTGCACTCTTGCCCCGATCCATACTTTGAACCATCTCATATCCCAGTTCCTCTTGCAGTCAATAATTCACATAGTCGTAGAGGGGGGAAAGTAAAGACCGTGGTTATTGCGTTGGTAATTTCTACTTTTGTGGCTCTCTGCATACTTTTGGGAATAGTGTTGGTGATTTGTTTTAGAAGAAGTAAAATTACTCGGCTAAGCAGCATCAGAAGGCAAGAAGTGGTAACCTTCCAAATTGTTCCAATAGAATTGAGTTATGATAGTCTTGTCACAGCTGCCGGAAATTTCAGCATCCGGTATCTAATCGGCACAGGTGGCTTCGGGTCAACTTACAAGGCAGAGCTATCCCCAGGTTTTCTTGTTGCCATAAAGAGGCTGTCAATAGGTAAATTTCAAGGCATTGAACAGTTCGAAACAGAAATAAGGACGCTTGGGAGAATTCGACACAAGAATCTTGTGACTCTAATTGGCTATTATGTAGGAAAAGCTGAAATGTTGTTAATTTACAATTACCTCTCTGGTGGAAACCTTGAAGCGTTCATACATAATAGCTACGGTGTGGTGCTATTAGAATTGATATCAGGAAGAAGGTCTCTTGATCCATCGTTTTCCGATTATGGAAATGGATTCAATATAGTACCATGGGCGGAGCTGCTAATGACTGAAGGTCGCTGTTCTGAGCTATTTTCGTCAGCTTTGTGGGAAACAGGACCTAAGGAAAAGTTGATGGGGCTTCTAAAGATTGCATTAACATGCACCGAAGAGACTCTTTCTATTCGACCGTCAATGAAGATTGTACTTGAGAAATTGAAACAGTTGAAAAGTTAA 2892 0.4028 MALIFHHLLIHCILFFFFTTHHANASIPNDALSLLTFKRFVSSDPSNLLSGWTHQKSSTFCNWHGVTCGGGGGDGRVTSLNVTGLRGGELSASIGDLSELKVLSVPGNMFSGEIPVSLLNLLELEVLEVQGNNFSGKVPFFQMSCFKKLRLVNLSGNAFSDSIPNGLVFSRNVKIVDLSNNQFSGSIPLNDSSSCDSLKYLKLSNNFLGGEIPPQIGKCRNLRTLLVDGNILEGEIPYEIENVVELRVLDVSRNSLTGGIPKQLANCLKLSVLVLTDLFDDRRGGFDEVDDRFRGEYNAFDGNIPHEVLLLTSLRVLWAPRANLGGHLPPVGWTDSCSLRVLNLAENYVTGVVSESLGMCKNLSFLDLSSNNLVGYVSLHQLRVPCMTYFNVSRNNISGMLPGLRKERCKLTSVVALESAFLELEGLNDVYFNIPVLKFQQNAFIGSGFEETIVVSHDFSWNSFAGSLPLFFLGDNLFTPTRNVSYMLSLNNNKFNGTIPYRLVSNCNDLKTLSVNLSTNQLSGEISQALFLDCLQLTDFEAAYNQIDGSIGPGIGELALLQCLDLSGNKLSGALPNELGNLKNLKWMLLGGNNLTGEIPYKFGRLTSLVVLNVSHNALFGTIPTTLTNATNLEILLLDHNNLSGEIPVSVSDLSKLVQLDVSFNNLSGHIPHLQHPSHCDSYIGNKNLHSCPDPYFEPSHIPVPLAVNNSHSRRGGKVKTVVIALVISTFVALCILLGIVLVICFRRSKITRLSSIRRQEVVTFQIVPIELSYDSLVTAAGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLSIGKFQGIEQFETEIRTLGRIRHKNLVTLIGYYVGKAEMLLIYNYLSGGNLEAFIHNSYGVVLLELISGRRSLDPSFSDYGNGFNIVPWAELLMTEGRCSELFSSALWETGPKEKLMGLLKIALTCTEETLSIRPSMKIVLEKLKQLKS 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02833 963 Gene3D Phosphorylase Kinase; domain 1 746 859 - -
Trre13g02833 963 SUPERFAMILY Protein kinase-like (PK-like) 752 877 IPR011009 -
Trre13g02833 963 Gene3D Transferase(Phosphotransferase) domain 1 872 962 - -
Trre13g02833 963 Gene3D Ribonuclease Inhibitor 87 278 IPR032675 -
Trre13g02833 963 ProSiteProfiles Protein kinase domain profile. 784 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02833 963 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 454 699 - -
Trre13g02833 963 Pfam Leucine rich repeat 608 667 IPR001611 GO:0005515
Trre13g02833 963 Pfam Leucine Rich Repeat 197 219 IPR001611 GO:0005515
Trre13g02833 963 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515
Trre13g02833 963 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 278 - -
Trre13g02833 963 Pfam Protein tyrosine and serine/threonine kinase 788 872 IPR001245 GO:0004672|GO:0006468
Trre13g02833 963 SUPERFAMILY L domain-like 301 694 - -
Trre13g02833 963 FunFam Leucine-rich repeat receptor-like protein kinase 27 189 - -
Trre13g02833 963 Gene3D Ribonuclease Inhibitor 25 86 IPR032675 -
Trre13g02833 963 Gene3D Ribonuclease Inhibitor 485 699 IPR032675 -
Trre13g02833 963 Gene3D Ribonuclease Inhibitor 293 482 IPR032675 -
Trre13g02833 963 SUPERFAMILY RNI-like 82 410 - -
Trre13g02833 963 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Trre13g02833 963 ProSitePatterns Protein kinases ATP-binding region signature. 790 818 IPR017441 GO:0005524
Trre13g02833 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 299 870 - -
Trre13g02833 963 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 748 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02833 Trre-Chr13 27509930 27513112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02833 872 962 Receptor kinase-like Gene Family AT3G02130 54.945 1.96e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Trre13g02833 PK_Tyr_Ser-Thr 1.7e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02833 - - cam:101512699 1313.9