Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02832 ATGGCTCTCATTTTTCATCATCTTCTTATTCACTGTATTCTCTTCTTCTTCTTCACAACCCATCACGCAAATGCTTCCATTCCCAACGACGCATTGTCTCTTCTCACCTTCAAACGCTTCGTCTCTTCTGACCCTTCAAATCTTCTATCCGGTTGGACCCATCAAAAATCTTCCACATTCTGTAACTGGCACGGCGTCACTTGCGGCGGCGGTGGTGGTGACGGAAGAGTGACGTCACTTAATGTTACCGGTCTTCGTGGCGGTGAATTGTCGGCTTCCATTGGAGATTTGTCTGAGCTTAAAGTTTTGTCTGTTCCAGGAAACATGTTTTCCGGTGAGATTCCGGTGAGTTTACTGAATCTGTTGGAACTTGAGGTTCTTGAGGTTCAAGGAAACAACTTTTCAGGGAAAGTTCCTTTTTTTCAGATGAGTTGTTTTAAAAAACTTAGACTTGTTAATCTCTCTGGTAATGCTTTTTCTGATTCTATTCCTAATGGGTTAGTTTTTTCTAGGAATGTGAAAATTGTTGATTTGTCTAATAATCAATTTTCTGGTTCTATTCCTTTGAATGATTCTAGTAGTTGTGATTCTTTGAAGTATTTGAAACTGTCTAATAATTTTTTGGGGGGTGAGATTCCACCACAAATTGGGAAATGTAGAAACTTGAGGACCCTTTTGGTTGATGGGAATATATTGGAAGGTGAAATCCCTTATGAGATTGAGAATGTTGTTGAACTTAGAGTTTTAGATGTTTCTAGAAACAGTCTCACTGGAGGGATCCCTAAACAGTTAGCTAATTGTTTGAAATTGTCTGTGCTTGTGCTTACTGATTTGTTTGATGATCGCCGCGGCGGTTTTGATGAGGTGGACGATAGGTTTAGAGGTGAATATAATGCTTTTGATGGGAATATTCCTCATGAAGTGTTGTTGCTTACGAGTTTGCGGGTTTTGTGGGCGCCTAGAGCGAATCTTGGTGGACATTTGCCTCCTGTTGGGTGGACAGATTCATGCTCTCTTAGAGTACTCAATTTGGCTGAGAATTATGTTACTGGTGTTGTATCCGAGAGTTTGGGGATGTGTAAGAATTTGTCGTTTTTGGACTTGAGTTCTAACAATTTAGTCGGATACGTATCTCTGCATCAGCTTCGGGTTCCTTGTATGACGTATTTCAACGTAAGCAGGAATAATATATCTGGCATGCTTCCGGGGCTTAGGAAAGAAAGGTGTAAACTGACAAGTGTCGTTGCGCTAGAATCTGCATTTCTAGAATTGGAAGGTTTGAATGATGTATACTTTAACATTCCTGTTTTGAAATTTCAACAGAATGCTTTCATCGGATCAGGTTTCGAAGAGACTATTGTCGTTAGCCATGATTTCAGCTGGAACAGTTTTGCGGGGTCTTTACCGTTGTTTTTTCTTGGAGACAATCTTTTTACTCCTACTCGTAATGTATCCTACATGCTGTCTCTCAATAATAATAAATTCAACGGAACTATTCCATACCGACTAGTTTCAAACTGTAACGACCTCAAGACATTGTCGGTTAACCTGAGTACGAATCAACTATCCGGTGAAATTTCCCAAGCGTTGTTTCTTGACTGCCTGCAGTTGACGGATTTTGAAGCGGCATACAATCAAATTGATGGATCAATTGGACCTGGTATAGGTGAGTTGGCGTTGCTTCAGTGTCTTGATTTGAGTGGTAACAAACTATCTGGAGCACTGCCGAATGAGTTGGGAAACCTGAAAAACCTAAAATGGATGCTTTTAGGAGGAAACAATCTGACAGGGGAAATTCCTTACAAATTTGGTAGATTGACGTCCCTCGTTGTTTTGAATGTATCTCACAATGCTCTATTTGGAACAATTCCAACAACTTTGACAAATGCAACAAATCTTGAAATTCTGTTACTAGATCACAACAACCTCTCTGGAGAAATACCTGTATCTGTTTCTGATCTTTCCAAGCTTGTTCAACTAGATGTTTCTTTCAACAATCTTTCCGGTCATATTCCTCATCTTCAACACCCGAGTCATTGCGATTCATATATAGGGAATAAAAACCTGCACTCTTGCCCCGATCCATACTTTGAACCATCTCATATCCCAGTTCCTCTTGCAGTCAATAATTCACATAGTCGTAGAGGGGGGAAAGTAAAGACCGTGGTTATTGCGTTGGTAATTTCTACTTTTGTGGCTCTCTGCATACTTTTGGGAATAGTGTTGGTGATTTGTTTTAGAAGAAGTAAAATTACTCGGCTAAGCAGCATCAGAAGGCAAGAAGTGGTAACCTTCCAAATTGTTCCAATAGAATTGAGTTATGATAGTCTTGTCACAGCTGCCGGAAATTTCAGCATCCGGTATCTAATCGGCACAGGTGGCTTCGGGTCAACTTACAAGGCAGAGCTATCCCCAGGTTTTCTTGTTGCCATAAAGAGGCTGTCAATAGGTAAATTTCAAGGCATTGAACAGTTCGAAACAGAAATAAGGACGCTTGGGAGAATTCGACACAAGAATCTTGTGACTCTAATTGGCTATTATGTAGGAAAAGCTGAAATGTTGTTAATTTACAATTACCTCTCTGGTGGAAACCTTGAAGCGTTCATACATAATAGGTCAGGAAAAAATGTGCAGTGGCCGGTTATTTACAAAATTGCGAAAGACATTGCCGAGGCCCTTACTTACCTTCATTATGCTTGTGTTCCTCGAATAGTTCACCGAGATATCAAGCCTAGCAACATTTTACTCGACGAAAATCTAAATGCCTACCTGTCCGATTTCGGCTTGGCACGGCTGCTTGAGGTATCCGAGACTCATGCCACTACCGATGTGGCCGGCACGTTTGGCTATGTTGCACCTGAATATGCCACCACTTGTAGGGTTTCTGATAAAGCTGATGTTTACAGCTACGGTGTGGTGCTATTAGAATTGATATCAGGAAGAAGGTCTCTTGATCCATCGTTTTCCGATTATGGAAATGGATTCAATATAGTACCATGGGCGGAGCTGCTAATGACTGAAGGTCGCTGTTCTGAGCTATTTTCGTCAGCTTTGTGGGAAACAGGACCTAAGGAAAAGTTGATGGGGCTTCTAAAGATTGCATTAACATGCACCGAAGAGACTCTTTCTATTCGACCGTCAATGAAGATTGTACTTGAGAAATTGAAACAGTTGAAAAGTTAA 3183 0.4084 MALIFHHLLIHCILFFFFTTHHANASIPNDALSLLTFKRFVSSDPSNLLSGWTHQKSSTFCNWHGVTCGGGGGDGRVTSLNVTGLRGGELSASIGDLSELKVLSVPGNMFSGEIPVSLLNLLELEVLEVQGNNFSGKVPFFQMSCFKKLRLVNLSGNAFSDSIPNGLVFSRNVKIVDLSNNQFSGSIPLNDSSSCDSLKYLKLSNNFLGGEIPPQIGKCRNLRTLLVDGNILEGEIPYEIENVVELRVLDVSRNSLTGGIPKQLANCLKLSVLVLTDLFDDRRGGFDEVDDRFRGEYNAFDGNIPHEVLLLTSLRVLWAPRANLGGHLPPVGWTDSCSLRVLNLAENYVTGVVSESLGMCKNLSFLDLSSNNLVGYVSLHQLRVPCMTYFNVSRNNISGMLPGLRKERCKLTSVVALESAFLELEGLNDVYFNIPVLKFQQNAFIGSGFEETIVVSHDFSWNSFAGSLPLFFLGDNLFTPTRNVSYMLSLNNNKFNGTIPYRLVSNCNDLKTLSVNLSTNQLSGEISQALFLDCLQLTDFEAAYNQIDGSIGPGIGELALLQCLDLSGNKLSGALPNELGNLKNLKWMLLGGNNLTGEIPYKFGRLTSLVVLNVSHNALFGTIPTTLTNATNLEILLLDHNNLSGEIPVSVSDLSKLVQLDVSFNNLSGHIPHLQHPSHCDSYIGNKNLHSCPDPYFEPSHIPVPLAVNNSHSRRGGKVKTVVIALVISTFVALCILLGIVLVICFRRSKITRLSSIRRQEVVTFQIVPIELSYDSLVTAAGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLSIGKFQGIEQFETEIRTLGRIRHKNLVTLIGYYVGKAEMLLIYNYLSGGNLEAFIHNRSGKNVQWPVIYKIAKDIAEALTYLHYACVPRIVHRDIKPSNILLDENLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSYGVVLLELISGRRSLDPSFSDYGNGFNIVPWAELLMTEGRCSELFSSALWETGPKEKLMGLLKIALTCTEETLSIRPSMKIVLEKLKQLKS 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02832 1060 ProSiteProfiles Protein kinase domain profile. 784 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02832 1060 FunFam Leucine-rich repeat receptor-like protein kinase 27 189 - -
Trre13g02832 1060 SUPERFAMILY L domain-like 297 447 - -
Trre13g02832 1060 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 457 699 - -
Trre13g02832 1060 Pfam Leucine rich repeat 608 667 IPR001611 GO:0005515
Trre13g02832 1060 Gene3D Ribonuclease Inhibitor 87 278 IPR032675 -
Trre13g02832 1060 ProSitePatterns Serine/Threonine protein kinases active-site signature. 904 916 IPR008271 GO:0004672|GO:0006468
Trre13g02832 1060 SUPERFAMILY Protein kinase-like (PK-like) 761 1055 IPR011009 -
Trre13g02832 1060 Pfam Protein kinase domain 789 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02832 1060 Pfam Leucine Rich Repeat 197 219 IPR001611 GO:0005515
Trre13g02832 1060 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515
Trre13g02832 1060 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 860 1060 - -
Trre13g02832 1060 ProSitePatterns Protein kinases ATP-binding region signature. 790 818 IPR017441 GO:0005524
Trre13g02832 1060 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Trre13g02832 1060 SUPERFAMILY L domain-like 93 679 - -
Trre13g02832 1060 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 278 - -
Trre13g02832 1060 SUPERFAMILY L domain-like 487 595 - -
Trre13g02832 1060 Gene3D Phosphorylase Kinase; domain 1 746 859 - -
Trre13g02832 1060 SMART serkin_6 784 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02832 1060 CDD STKc_IRAK 790 1058 - -
Trre13g02832 1060 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 748 859 - -
Trre13g02832 1060 Gene3D Transferase(Phosphotransferase) domain 1 860 1059 - -
Trre13g02832 1060 PANTHER LEUCINE RICH REPEAT KINASE 2 454 1059 - -
Trre13g02832 1060 Gene3D Ribonuclease Inhibitor 25 86 IPR032675 -
Trre13g02832 1060 Gene3D Ribonuclease Inhibitor 482 699 IPR032675 -
Trre13g02832 1060 Gene3D Ribonuclease Inhibitor 293 481 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02832 Trre-Chr13 27509930 27513112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02832 29 1059 Receptor kinase-like Gene Family AT3G02130 41.615 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Trre13g02832 Pkinase 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02832 - - cam:101512699 1678.69