Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02828 ATGTCAATTTCTCTTGCAGCGATAATAGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATATCTATACTACTTTTATGGTTTTGTTTGTTTCGCCAAACAAGTGTTTCTAGGACTTCAGAGACAGGGTCGTCTGATCCTTCACAAGTTGGAAGACATGGTGGAATGGAGTCGCAAATGCGAGATACTAGGCGTTTTGCGTTGGAAGAACTTTCACATGCAACAAAGAATTTCAGTGACAAAAATTTGATTGGAGAAGGAAAATTTGGTGAGGTTTACAAAGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAGAAGCGTCGCGCTGCCACAAGCCAGGAATTTGTTGACGAGGTGCGCTATCTTTCAGCTATTCAACATCGGAATCTCGTAACTCTTATCGGATACTGCCAAGAAAACAATCTACAGTTTCTTATATATGAATATGTGCCTAATGGAAGCGTCTCCATTCACTTGTATGGCGCTACTAGTCAACAACCGCGGGAGAAGCTAGAATTCAAGCATAGACTCTCAATAGCTCAAGGTGCTGCTAAAGGTTTGGCTCATCTTCACTCTTTGAGTCCCCGTTTGGTGCATAAGAATTTCAAAACATCTAATGTTCTTGTCGATGAAAACTTCATTTCTAAGGTCGCGGATGCAGGGCTTCGTAATTTTTTAGGGAGAGTTGACATTGCAGGCTCATCTTCTCAAGTGGCGTCAGACGAGATATTCCTTGCACCTGAGGTGAGAGAGTTCAGACAATTTTCTGAGAAGAGCGATGTGTATAGCTTTGGGGTATTTTTGCTAGAATTGTTGAGTGGGAAGGAAGCAACAGAATCACCCTCTATAAACACAAGTCAAAATCTGGTCGAATCGGTGCTAAGTAATCAAGACAGTAGCATTATGACTACAATCATTGATCAAAGAATGGAGAGTAGATTTACAGCTGAAGGCATGGAAAATTACATCCTACTCTTAATAAGATGTTTGAATCCTTCAAGTGAAAGAAGACCTGCAATGAGCTATGTTGAAATGGAACTCGATCGAATCCTCGAAAAAGAGATGAACTTGACAACAATGATGGGTGAAGGAACACCAACTGTGACTCTTGGAAGTCAATTATTCAAATCAACTAAATAA 1143 0.4121 MSISLAAIIGGAAGAVALVGISILLLWFCLFRQTSVSRTSETGSSDPSQVGRHGGMESQMRDTRRFALEELSHATKNFSDKNLIGEGKFGEVYKGLLQDGMLVAIKKRRAATSQEFVDEVRYLSAIQHRNLVTLIGYCQENNLQFLIYEYVPNGSVSIHLYGATSQQPREKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTSNVLVDENFISKVADAGLRNFLGRVDIAGSSSQVASDEIFLAPEVREFRQFSEKSDVYSFGVFLLELLSGKEATESPSINTSQNLVESVLSNQDSSIMTTIIDQRMESRFTAEGMENYILLLIRCLNPSSERRPAMSYVEMELDRILEKEMNLTTMMGEGTPTVTLGSQLFKSTK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02828 380 SUPERFAMILY Protein kinase-like (PK-like) 58 345 IPR011009 -
Trre13g02828 380 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 14 357 IPR047117 -
Trre13g02828 380 MobiDBLite consensus disorder prediction 38 52 - -
Trre13g02828 380 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Trre13g02828 380 Pfam Protein tyrosine and serine/threonine kinase 82 347 IPR001245 GO:0004672|GO:0006468
Trre13g02828 380 ProSiteProfiles Protein kinase domain profile. 78 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02828 380 Gene3D Phosphorylase Kinase; domain 1 50 150 - -
Trre13g02828 380 Gene3D Transferase(Phosphotransferase) domain 1 151 366 - -
Trre13g02828 380 FunFam Protein kinase superfamily protein 151 365 - -
Trre13g02828 380 FunFam Protein kinase superfamily protein 43 150 - -
Trre13g02828 380 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02828 Trre-Chr13 27478075 27480201 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02828 64 353 Receptor kinase-like Gene Family AT1G30570 40.339 7.44e-61 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Trre13g02828 PK_Tyr_Ser-Thr 9.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02828 - - tpra:123888647 692.575