Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02827 ATGTCAATTTCTCTTGCAGCGATAATAGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATATCTATACTACTTTTATGGTTTTGTTTGTTTCGCCAAACAAGTGTTTCTAGGACTTCAGAGACAGGGTCGTCTGATCCTTCACAAGGAATTCCATTACATGCAGTTGGAAGACATGGTGGAATGGAGTCGCAAATGCGAGATACTAGGCGTTTTGCGTTGGAAGAACTTTCACATGCAACAAAGAATTTCAGTGACAAAAATTTGATTGGAGAAGGAAAATTTGGTGAGGTTTACAAAGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAGAAGCGTCGCGCTGCCACAAGCCAGGAATTTGTTGACGAGGTGCGCTATCTTTCAGCTATTCAACATCGGAATCTCGTAACTCTTATCGGATACTGCCAAGAAAACAATCTACAGTTTCTTATATATGAATATGTGCCTAATGGAAGCGTCTCCATTCACTTGTATGGCGCTACTAGTCAACAACCGCGGGAGAAGCTAGAATTCAAGCATAGACTCTCAATAGCTCAAGGTGCTGCTAAAGGTTTGGCTCATCTTCACTCTTTGAGTCCCCGTTTGGTGCATAAGAATTTCAAAACATCTAATGTTCTTGTCGATGAAAACTTCATTTCTAAGGTCGCGGATGCAGGGCTTCGTAATTTTTTAGGGAGAGTTGACATTGCAGGCTCATCTTCTCAAGTGGCGTCAGACGAGATATTCCTTGCACCTGAGGTGAGAGAGTTCAGACAATTTTCTGAGAAGAGCGATGTGTATAGCTTTGGGGTATTTTTGCTAGAATTGTTGAGTGGGAAGGAAGCAACAGAATCACCCTCTATAAACACAAGTCAAAATCTGGTCGAATCGGTGCTAAGTAATCAAGACAGTAGCATTATGACTACAATCATTGATCAAAGAATGGAGAGTAGATTTACAGCTGAAGGCATGGAAAATTACATCCTACTCTTAATAAGATGTTTGAATCCTTCAAGTGAAAGAAGACCTGCAATGAGCTATGTTGAAATGGAACTCGATCGAATCCTCGAAAAAGAGATGAACTTGACAACAATGATGGGTGAAGGAACACCAACTGTGACTCTTGGAAGTCAATTATTCAAATCAACTAAATAA 1161 0.4117 MSISLAAIIGGAAGAVALVGISILLLWFCLFRQTSVSRTSETGSSDPSQGIPLHAVGRHGGMESQMRDTRRFALEELSHATKNFSDKNLIGEGKFGEVYKGLLQDGMLVAIKKRRAATSQEFVDEVRYLSAIQHRNLVTLIGYCQENNLQFLIYEYVPNGSVSIHLYGATSQQPREKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTSNVLVDENFISKVADAGLRNFLGRVDIAGSSSQVASDEIFLAPEVREFRQFSEKSDVYSFGVFLLELLSGKEATESPSINTSQNLVESVLSNQDSSIMTTIIDQRMESRFTAEGMENYILLLIRCLNPSSERRPAMSYVEMELDRILEKEMNLTTMMGEGTPTVTLGSQLFKSTK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02827 386 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 14 363 IPR047117 -
Trre13g02827 386 SUPERFAMILY Protein kinase-like (PK-like) 64 351 IPR011009 -
Trre13g02827 386 FunFam Protein kinase superfamily protein 157 371 - -
Trre13g02827 386 Gene3D Phosphorylase Kinase; domain 1 56 156 - -
Trre13g02827 386 Pfam Protein tyrosine and serine/threonine kinase 88 353 IPR001245 GO:0004672|GO:0006468
Trre13g02827 386 FunFam Protein kinase superfamily protein 43 156 - -
Trre13g02827 386 ProSiteProfiles Protein kinase domain profile. 84 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02827 386 Gene3D Transferase(Phosphotransferase) domain 1 157 372 - -
Trre13g02827 386 MobiDBLite consensus disorder prediction 38 63 - -
Trre13g02827 386 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02827 Trre-Chr13 27478075 27480201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02827 1 359 Receptor kinase-like Gene Family AT1G30570 36.170 5.93e-61 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Trre13g02827 PK_Tyr_Ser-Thr 9.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02827 - - tpra:123888647 711.835