Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02817 ATGAGCCCTTTGAAAGGAAAGAAGAAACAAACAACCGGAACAACAAGCGAAACAACAACACAAGAACAACAACAAACGGCATGGGGAGGAAGATACCTCGGAGTAAGAAGAAGACCATGGGGAAGATACGCGGCGGAGATTCGAGATCCTTCTACGAAAGAAAGACACTGGTTAGGAACATTCGACACTGCTGAAGAAGCTGCTTTAGCTTACGATAGAGCCGCACGTGGCATGCGTGGATCACGTGCCAGAACCAATTTTGTTTACTCCGATACACCTCCTGGTTCTTCCGTTACACCTATTCTGTCCCCCGACCAACAACAACAACAACAACAACAAACTCAAACTTTTCATGACCTTTCATTTGTTCTTCAACCCGACCCGGTTCCTTGTCTTGACCCGGTTTCAATCATAACTTCCTCCGGTAATTACGGTTACGGTTACAATGAGGAAAATAATAATTATTTAAATAAATATAATCTTTCTCCTCAAGTTCCTCTTCCCACATTGGAGGCTAGTATTAATAATATTAATAACAATGGAAATTCCTATTTTAACCTTAACAGCAGCAGCAGTGTAGAGCTTCCTCCTTTGCCACCGGATATTACAAGCTCCACGTGTTATGATCAGAGTAACTATGGATTCAACGGTGGTGATCATAATCATGATCATGGGTATTTTTATTCTTCATCATGGGATCAGAATGTGGATTGTTATAATATGGGAGGTGCAGATAATAATAATAATACTACATTAGCAGGTTCTGTTAATGCTACTAGTAGTACTTTTGATTTCGGAAGTTCGTCCTTTTTCTTCTGA 819 0.4054 MSPLKGKKKQTTGTTSETTTQEQQQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARGMRGSRARTNFVYSDTPPGSSVTPILSPDQQQQQQQQTQTFHDLSFVLQPDPVPCLDPVSIITSSGNYGYGYNEENNNYLNKYNLSPQVPLPTLEASINNINNNGNSYFNLNSSSSVELPPLPPDITSSTCYDQSNYGFNGGDHNHDHGYFYSSSWDQNVDCYNMGGADNNNNTTLAGSVNATSSTFDFGSSSFFF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02817 272 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g02817 272 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 157 - -
Trre13g02817 272 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Trre13g02817 272 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Trre13g02817 272 MobiDBLite consensus disorder prediction 90 112 - -
Trre13g02817 272 FunFam Ethylene-responsive transcription factor 2 31 89 - -
Trre13g02817 272 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Trre13g02817 272 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Trre13g02817 272 MobiDBLite consensus disorder prediction 1 28 - -
Trre13g02817 272 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Trre13g02817 272 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Trre13g02817 272 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Trre13g02817 272 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02817 Trre-Chr13 27314288 27315106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02817 15 224 AP2-EREBP Transcription Factor Family AT5G13910 42.857 7.98e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g02817 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02817 K09286 - gmx:100809600 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02817 13 27314288 27315106 Trre13g02817 13 27314288 27315106 ECH