Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02798 ATGGCTTCTACTTCAAGGAGATTACCAACACCTGAAGAAAGAGAAAAATGGAAACACATTTTTGACACTACTATAGATCCAAATCTGGCACCAATTGAAATCCCTCAGCCTTTTTTCAACAAAATGAAAAGTGAGTTTATAAAGCACACATTTGGTTGGATCAGGGGTCCCAAAAAAATGAAATTCATGGTTAGATATCTCCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAGTGTGTGTTTCTCGATATTTTGGATTTGTTATACCAACAAGGGTGACACTTAGCTATGTGATTGACGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCAGAGCCAAATTTGAAGATTCGTGCATCTCAGAGAAAAAAAGATTTGAAGTCCACACCAAAGAAATCAAACAAACAACATCAGTATAAGCATTCAAGGAGACCAGTCATTGTAAAGCTGAATCTTGATGGAAGCTATGGTTGGGAGAAGATTGTAACTGGAGCTGGTGCAGCTGATGCAAGACCTCAAGTCATGCATTTTCCTAAGCAATTGTCTAGATTGTTTTTGGGAGAAAAACAAAACAAAATGTTGGTCCAAGCTGGAGCAGGAGATACATTCTCTTGCAAGATTATCACAGCGAGAAGGAATATAGCTGAAAAATACATATCAAAAGAGTGGTCCAAATTTGTGAGAAGAAACAACCTCCAAGTTGGAGACAAGCTCATTTTCACTCTTCAAAACCCACCAACAAAACTCCTGATTCAGATCATCCGTTGTAGTGTGCACAACTGA 813 0.385 MASTSRRLPTPEEREKWKHIFDTTIDPNLAPIEIPQPFFNKMKSEFIKHTFGWIRGPKKMKFMVRYLQSNSGIKLSSGVCVSRYFGFVIPTRVTLSYVIDENTFWMRIYPPLQPVKTEFPPEPNLKIRASQRKKDLKSTPKKSNKQHQYKHSRRPVIVKLNLDGSYGWEKIVTGAGAADARPQVMHFPKQLSRLFLGEKQNKMLVQAGAGDTFSCKIITARRNIAEKYISKEWSKFVRRNNLQVGDKLIFTLQNPPTKLLIQIIRCSVHN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02798 270 ProSiteProfiles B3 DNA-binding domain profile. 170 267 IPR003340 GO:0003677
Trre13g02798 270 SUPERFAMILY DNA-binding pseudobarrel domain 183 265 IPR015300 -
Trre13g02798 270 Gene3D - 125 267 IPR015300 -
Trre13g02798 270 CDD B3_DNA 185 265 IPR003340 GO:0003677
Trre13g02798 270 MobiDBLite consensus disorder prediction 120 151 - -
Trre13g02798 270 Pfam B3 DNA binding domain 185 265 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02798 Trre-Chr13 26960229 26961966 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g02798 B3 3.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02798 - K09287 tpra:123904760 123.635