Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02779 ATGGATCCTCAAGGTCATGGCCAAAACCCATCTATGGGAGTTGTTGGCAGTGGACAAATGGCCACATATGGTTCTAATCCGTACCAGCCCAACCATTTAACTGGGTCTGCTGGGATGGTTGTTCCCAATGTGGGGAATATTCAACCTGGTGGTCAACCAGATGGAACTCAGCTCGGACAACACCAGCTTGCTTATCAGCATATTCATCAGCAACAACAACAGCAGCAGCAGCAACAGCTCCAGGCCTTTTGGGGAAATCAGTATCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCCTGGCGAGGATCAAGAAGATAATGAAGGCTGATGAGGATGTGAAGATGATATCAGCTGAGGCGCCGGTTGTGTTTGCTAGGGCGTGCGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAGAATGATATTGCAGCTGCCATCACAGGAACTGATATCTTCGATTTCTTGGTTGACATTGTTCCCCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGACCAATGCCTGTTGGAGGACCTGCTGATGGAATTCCTTATTGCTATATGCCGCCTCAAAATGCACAGCAAGCTGGAAATCCTGGTCTCATGATGCATAATCCAAACATGTATGCTCCGCAGTCTCATCCATACATGGCACCTCAAATGTGGCCTCAACCGTCAGAGCAACAACCATCGCCTTCAGATCAGTAG 771 0.4695 MDPQGHGQNPSMGVVGSGQMATYGSNPYQPNHLTGSAGMVVPNVGNIQPGGQPDGTQLGQHQLAYQHIHQQQQQQQQQQLQAFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMMHNPNMYAPQSHPYMAPQMWPQPSEQQPSPSDQ 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02779 256 MobiDBLite consensus disorder prediction 233 256 - -
Trre13g02779 256 SUPERFAMILY Histone-fold 68 173 IPR009072 GO:0046982
Trre13g02779 256 Pfam Core histone H2A/H2B/H3/H4 67 164 IPR007125 GO:0003677
Trre13g02779 256 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 67 212 - -
Trre13g02779 256 MobiDBLite consensus disorder prediction 1 25 - -
Trre13g02779 256 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Trre13g02779 256 FunFam Nuclear transcription factor Y subunit gamma 67 179 - -
Trre13g02779 256 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02779 Trre-Chr13 26818541 26819311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02779 1 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.525 5.18e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre13g02779 Histone 3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02779 K08066 - gmx:100527803 358.221