Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02778 ATGGGCGAGTGTAAAAAATTAGCAGACAGGTATCTGAAGCACGAAGTTCTCGGAGAAGGTACCTATGGTATCGTTTTCAAAGCCATTGATACCCAGACAGGACAAATGGTTGCAATTAAAAAGATTCGGAAAAGGATTGATGAGCCATTAGATGGGGTCAATTTTACAGCTCTTAGAGAAATTAAGCTTCTCAAAGAACTCAAACATCCAAACATTATTGATTTAATTGATGTATTCCAATATAAGCAGAATTTGCATCTTGTATTTGAATTCATGGAGACAGATCTTGAAGCTGTCATAAGAGACCGGAATATTTTCCTTTCTCCGGCTGATATTAAATCTTACCTTCTAATGATACTAAAAGGTCTTTCTTATTGTCACAAAAAATGGGTTTTGCATAGGGATGTAAAACCAAACAACTTGTTGGTAGGACAAAATGGACAGCTGAAACTTGCAGATTTTGGTTTATCACAGATATTTGGAGACCCAGACCACGAGTTCGCTGATCAGGCATTTGCTCGGTGGTACAGAGCGCCTGAGCTATTATTTGGTGCCAAGAAGTACGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTGTATTTGCTGAACTTCTTCTTCGTAAACCCTTTTTGGAGGGTTCAACCGATACGCATCAAACACGGAAGATTTTCTCAGCATTTGGAACCCCATCACCTTCTCAGTGGCCTGATATGATGTGCCTTAAATATTATGTTCAAGAAAAACATATTGCTGCTCCCCCGTTGCGCTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACCTATGATCCAAATGCTAGAATTTCAGTGCAGAAGGCATTAGAACACAGGTACTTTTCTTCTGCACCTCTGCCCACAGATCCAGAAAAGCTTCCAAGACCTGTTCCCAAGAGGGCATCTAGTGTCTCAGATCTGAATTCTTTTCAATTATCACCTTCTAGAAAGATTAGAAGAGTGATGCCAATGTGTGATGGATTTGAAGGCAATACGCTGGAAAGAAATAAGATTGATGATAATGTTGGTAATTTCAAACATACAGTTGGTAATAATACTGGCACAGATGAGCCCACACCAATGTCACTAAATTTTTCTATCTTTGGATTGAAACCTCCAAATAGACCAACAATTACCAGTGTTGACAGATCACATTTGAAAAGGAAATTATATTTAGATTTCCAGTCAACATGA 1230 0.3886 MGECKKLADRYLKHEVLGEGTYGIVFKAIDTQTGQMVAIKKIRKRIDEPLDGVNFTALREIKLLKELKHPNIIDLIDVFQYKQNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLLMILKGLSYCHKKWVLHRDVKPNNLLVGQNGQLKLADFGLSQIFGDPDHEFADQAFARWYRAPELLFGAKKYGSGVDVWAAACVFAELLLRKPFLEGSTDTHQTRKIFSAFGTPSPSQWPDMMCLKYYVQEKHIAAPPLRSLFPMASDDALDLLSKMFTYDPNARISVQKALEHRYFSSAPLPTDPEKLPRPVPKRASSVSDLNSFQLSPSRKIRRVMPMCDGFEGNTLERNKIDDNVGNFKHTVGNNTGTDEPTPMSLNFSIFGLKPPNRPTITSVDRSHLKRKLYLDFQST 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02778 409 Gene3D Transferase(Phosphotransferase) domain 1 94 309 - -
Trre13g02778 409 PANTHER CELL DIVISION PROTEIN KINASE 9 299 - -
Trre13g02778 409 FunFam Cyclin-dependent kinase D-1 2 93 - -
Trre13g02778 409 CDD STKc_CDK7 10 306 IPR037770 GO:0005675|GO:0008353|GO:0070985
Trre13g02778 409 FunFam Putative cyclin-dependent kinase 7 94 309 - -
Trre13g02778 409 ProSitePatterns Protein kinases ATP-binding region signature. 17 41 IPR017441 GO:0005524
Trre13g02778 409 MobiDBLite consensus disorder prediction 295 320 - -
Trre13g02778 409 SMART serkin_6 11 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02778 409 Pfam Protein kinase domain 12 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02778 409 ProSiteProfiles Protein kinase domain profile. 11 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02778 409 SUPERFAMILY Protein kinase-like (PK-like) 7 300 IPR011009 -
Trre13g02778 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Trre13g02778 409 Gene3D Phosphorylase Kinase; domain 1 2 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02778 Trre-Chr13 26805596 26810402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02778 3 407 Core Cell Cycle Gene Families AT1G18040 65.686 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Trre13g02778 Pkinase 4.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02778 K02202 - jre:109020969 615.15