Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02777 ATGAGTTTTCAAGATATTAAACATGGCTCCAATCCTCCTTCTCGCCGAACTCAGCCACCGTCGCAAGCCGTTGCTGCCGGAATTTTCCAGATCAATACCGCCGTTGCTACTTTCCGACGACTCGTTGACTCTGTTGGAACCGTTAAAGACACTCCAGATCATCGTCAGAAACTGCACAATACGAGGCAGAGGATATTGCAGCTTGTGAAGGATACTTCTGCTAAGCTCAAATCTTTGTCTGAATCTAATCGTGATGCTAATGCCAATTCTAGTAAGAAAATTGAAGATGCTAAGTTGGCAAGAGATTTCCAAACCACATTGCAAGAATTCCAAAAAGTTCAACAACTTGCTTCTGAGCGCGAAACTACTTACACTCCTGCTGCCTCAACTTCTTTACCAACAAGCTCGGGCCCTGGTGAAGAATCGATTGAGATAGACGCCGAAAGCCAACCTTTTATCAGAGGGCAGTTGAGGCAAGAGATAGTTCTATTGGATAATGAAATATCGTTCAATGAGGCAATGATTGAAGAAAGAGATCAGGGTCTTAGAGAGATAGAAGAGCAAATTGGAGAAGCAAATGAAATATTCAAGGACCTTGCTGTTTTGGTTCATGATCAGGGGATTGTTATTGATGACATTCAATCAAATATAGACACTTCTGCTGGTGCAACATCTCAAGCTAAGTACCAGCTAGTCAAAGCTTCCAAAAGTGTGAAATCCAAAAATAAATGGTGTTGGTGGGTGCTTTTAATTTTTGTGGCAGTGCTGGTCATCTTCCTCATTATACTTCTTACTTAG 798 0.4185 MSFQDIKHGSNPPSRRTQPPSQAVAAGIFQINTAVATFRRLVDSVGTVKDTPDHRQKLHNTRQRILQLVKDTSAKLKSLSESNRDANANSSKKIEDAKLARDFQTTLQEFQKVQQLASERETTYTPAASTSLPTSSGPGEESIEIDAESQPFIRGQLRQEIVLLDNEISFNEAMIEERDQGLREIEEQIGEANEIFKDLAVLVHDQGIVIDDIQSNIDTSAGATSQAKYQLVKASKSVKSKNKWCWWVLLIFVAVLVIFLIILLT 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02777 265 Coils Coil 69 89 - -
Trre13g02777 265 CDD SNARE_Qa 175 233 - -
Trre13g02777 265 SMART tSNARE_6 167 234 IPR000727 -
Trre13g02777 265 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g02777 265 FunFam Syntaxin-22 like 165 265 - -
Trre13g02777 265 MobiDBLite consensus disorder prediction 117 138 - -
Trre13g02777 265 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Trre13g02777 265 Gene3D - 166 265 - -
Trre13g02777 265 Gene3D - 10 130 - -
Trre13g02777 265 PANTHER SYNTAXIN 22 253 IPR045242 -
Trre13g02777 265 Pfam SNARE domain 209 260 IPR000727 -
Trre13g02777 265 MobiDBLite consensus disorder prediction 117 142 - -
Trre13g02777 265 SMART SynN_4 8 122 IPR006011 GO:0016020
Trre13g02777 265 FunFam Syntaxin-22 like 15 128 - -
Trre13g02777 265 SUPERFAMILY t-snare proteins 21 227 IPR010989 GO:0016020|GO:0016192
Trre13g02777 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 172 234 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02777 Trre-Chr13 26754477 26757162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02777 1 252 SNARE and Associated Proteins AT5G46860 58.238 4.52e-97 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02777 - - gmx:100787141 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02777 13 26754477 26757162 Trre13g02777 13 26754477 26757162 ECH